The transcription factor ZNF469 regulates collagen production in liver fibrosis
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 508 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 508 samples: 306 distinct titles, 27 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- The transcription factor ZNF469 regulates collagen production in liver fibrosisJCI insight · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE267145_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1109849 and SRA study SRP505882. Searching any of these in the dataset finder brings you back here.
How we read this: Read from the first 400 of 508 sample titles: 306 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8253036 HSC_capturemicroc_Rep1
- GSM8253037 HSC_capturemicroc_Rep2
- GSM8257189 HSC001_hNTO_12day_R1
- GSM8257190 HSC001_hNTO_12day_R2
- GSM8257191 HSC001_hNTO_12day_R3
- GSM8257192 HSC001_COL1A1_12day_R1
- GSM8257193 HSC001_COL1A1_12day_R2
- GSM8257194 HSC001_COL1A1_12day_R3
- GSM8257195 HSC001_NR3C1_12day_R1
- GSM8257196 HSC001_NR3C1_12day_R2
- GSM8257197 HSC001_NR3C1_12day_R3
- GSM8257198 HSC001_RARG_12day_R1
- GSM8257199 HSC001_RARG_12day_R2
- GSM8257200 HSC001_RARG_12day_R3
- GSM8257201 HSC001_ZNF469_12day_R1
- GSM8257202 HSC001_ZNF469_12day_R2
- GSM8257203 HSC001_ZNF469_12day_R3
- GSM8257204 HSC001_RUNX1_12day_R1
- GSM8257205 HSC001_RUNX1_12day_R2
- GSM8257206 HSC001_RUNX1_12day_R3
- GSM8257207 HSC001_HOXB4_12day_R1
- GSM8257208 HSC001_HOXB4_12day_R2
- GSM8257209 HSC001_HOXB4_12day_R3
- GSM8257210 HSC001_MEF2D_12day_R1
- GSM8257211 HSC001_MEF2D_12day_R2
- GSM8257212 HSC001_MEF2D_12day_R3
- GSM8257213 HSC001_MSC_12day_R1
- GSM8257214 HSC001_MSC_12day_R2
- GSM8257215 HSC001_MSC_12day_R3
- GSM8257216 HSC001_RFX5_12day_R1
- GSM8257217 HSC001_RFX5_12day_R2
- GSM8257218 HSC001_RFX5_12day_R3
- GSM8257219 HSC001_TBX3_12day_R1
- GSM8257220 HSC001_TBX3_12day_R2
- GSM8257221 HSC001_TBX3_12day_R3
- GSM8257222 HSC001_TEAD3_12day_R1
- GSM8257223 HSC001_TEAD3_12day_R2
- GSM8257224 HSC001_TEAD3_12day_R3
- GSM8260214 END612_nor_H3K27ac_cutrun
- GSM8260215 YOX147_nafl_H3K27ac_cutrun
+ 468 more — browse all 508 samples with per-sample file links →
- GSE202126 Single-cell Total-RNA Profiling Unveils Regulatory Hubs of Transcription Factors 1089 samples shares transcription, factor
- GSE226003 Disruption of RNAPII transcription elongation links Oncogenic splicing factor mutations to replciation stress and targetable alterations in chromatin landscape. 170 samples shares transcription, factor
- GSE246923 Opposing tumor cell-intrinsic and -extrinsic roles of the IRF1 transcription factor in anti-tumor immunity 49 samples shares transcription, factor
- GSE218867 ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeats 40 samples shares transcription, factor
- GSE94325 A family of double-homeodomain transcription factors promotes zygotic genome activation in placental mammals. 32 samples shares transcription, factor
- GSE293308 Regulation of endothelial cell chromatin availability and transcription factor activity in arterial-venous specification 18 samples shares transcription, factor
- GSE218866 ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeats [RNA-Seq] 12 samples shares transcription, factor
- GSE268853 Conserved Transcriptional Circuits Regulate Cardiac Fibroblast-Mediated Fibrosis 12 samples shares transcription, fibrosis
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.