Comparison of the expression levels of AML12-control and AML12-DEX at 17 h and 25 h, and comparison of the expression levels of HL-1-control and HL-1-CM at 16 h and 28 h in the AML12-HL-1 co-culture system in vitro
RNA-seq (gene expression) · mouse · 32 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 8 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE296760_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1261008 and SRA study SRP584301. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 32 samples.
How we read this: 8 replicated groups read from 32 sample titles; they account for 32 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8975992 AML12-control-17 h-1 AML12-control-17 h
- GSM8975993 AML12-control-17 h-2 AML12-control-17 h
- GSM8975994 AML12-control-17 h-3 AML12-control-17 h
- GSM8975995 AML12-control-17 h-4 AML12-control-17 h
- GSM8975996 AML12-DEX-17 h-1 AML12-DEX-17 h
- GSM8975997 AML12-DEX-17 h-2 AML12-DEX-17 h
- GSM8975998 AML12-DEX-17 h-3 AML12-DEX-17 h
- GSM8975999 AML12-DEX-17 h-4 AML12-DEX-17 h
- GSM8976000 AML12-control-25 h-1 AML12-control-25 h
- GSM8976001 AML12-control-25 h-2 AML12-control-25 h
- GSM8976002 AML12-control-25 h-3 AML12-control-25 h
- GSM8976003 AML12-control-25 h-4 AML12-control-25 h
- GSM8976004 AML12-DEX-25 h-1 AML12-DEX-25 h
- GSM8976005 AML12-DEX-25 h-2 AML12-DEX-25 h
- GSM8976006 AML12-DEX-25 h-3 AML12-DEX-25 h
- GSM8976007 AML12-DEX-25 h-4 AML12-DEX-25 h
- GSM8976008 HL-1-control-16 h-1 HL-1-control-16 h
- GSM8976009 HL-1-control-16 h-2 HL-1-control-16 h
- GSM8976010 HL-1-control-16 h-3 HL-1-control-16 h
- GSM8976011 HL-1-control-16 h-4 HL-1-control-16 h
- GSM8976012 HL-1-CM-16 h-1 HL-1-CM-16 h
- GSM8976013 HL-1-CM-16 h-2 HL-1-CM-16 h
- GSM8976014 HL-1-CM-16 h-3 HL-1-CM-16 h
- GSM8976015 HL-1-CM-16 h-4 HL-1-CM-16 h
- GSM8976016 HL-1-control-28 h-1 HL-1-control-28 h
- GSM8976017 HL-1-control-28 h-2 HL-1-control-28 h
- GSM8976018 HL-1-control-28 h-3 HL-1-control-28 h
- GSM8976019 HL-1-control-28 h-4 HL-1-control-28 h
- GSM8976020 HL-1-CM-28 h-1 HL-1-CM-28 h
- GSM8976021 HL-1-CM-28 h-2 HL-1-CM-28 h
- GSM8976022 HL-1-CM-28 h-3 HL-1-CM-28 h
- GSM8976023 HL-1-CM-28 h-4 HL-1-CM-28 h
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
- GSE269187 ZEB2 is a Master Switch Controlling the Tumor-Associated Macrophage Program [in vitro] 17 samples
- GSE314817 Multi-tissue, multi-time-point transcriptomic atlas of aging in mice and rats [mouse] 2432 samples
- GSE293709 Transcriptome analysis in the prefrontal cortex of different ASD mouse models treated with drug 1565 samples
- GSE294832 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part10] 1000 samples
- GSE326100 scRNA-seq of mouse cochlea organoid cells 768 samples
- GSE331176 Phagosome-mediated activation of STING by purine and pyrimidine-based bacterial cyclic dinucleotides 380 samples
- GSE304862 Semaglutide and exercise synergy in obesity: preserving muscle mass and uncovering organ crosstalk 209 samples
- GSE326452 Bulk RNA-seq of mouse brain following closed head injury: role of IL-1R1 signaling 200 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.