Total RNA transcriptomic profiling of mouse thoracic and abdominal perivascular adipose tissue of mice with an adipocyte-specific deletion of PRDM16 and flox control mice [snRNA-seq]
Single-nucleus RNA-seq · mouse · 2 samples
- What it is
- Single-nucleus RNA-seqGene activity measured in individual nuclei (used when whole cells are hard to isolate, for example from frozen tissue).
- Organism
- Mus musculus (mouse)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE297495_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1265082 and SRA study SRP586237. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 2 more — browse all 2 samples with per-sample file links →
- GSE297494 Total RNA transcriptomic profiling of mouse thoracic and abdominal perivascular adipose tissue of mice with an adipocyte-specific deletion of PRDM16 and flox control mice. 15 samples shares prdm16, adipocyte-specific, perivascular, abdominal, thoracic, deletion, adipose
- GSE293558 SM22α-lineage stromal cells in perivascular adipose tissue contribute to abdominal aortic aneurysm 2 samples shares perivascular, abdominal, adipose
- GSE194224 Perivascular adipose tissue plasticity in response to angiotensin II 40 samples shares perivascular, adipose
- GSE294746 Adipocyte-specific deletion of gp130 prevents ketogenic AQ1 diet–induced hepatic steatosis 23 samples shares adipocyte-specific, deletion
- GSE282147 Disordered maturation of mitochondrial matrix proteins in adipose tissue leads to local and systemic metabolic and inflammatory derangements in adipocyte-specific Mipep knockout mice 16 samples shares adipocyte-specific, adipose
- GSE294908 Evaluation of gene expressions in epididymal white adipose tissue (eWAT) of adipocyte-specific LTA4H overexpression mice. 16 samples shares adipocyte-specific, adipose
- GSE296762 Brown remodeling of white adipose tissue protects against abdominal aortic aneurysm via a novel batokine FSTL1 [CL316,243] 7 samples shares abdominal, adipose
- GSE8505 Isolated adipocytes and stromo-vascular fraction (SVF) of subcutaneous and intraabdominal adipose tissue in mice 12 samples shares abdominal, adipose
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.