← BioTransfer GEO Dataset Finder
GEO series

Cell-type and locus-specific epigenetic editing of memory expression [parseRNA_data]

GSE299740 Mus musculus Expression profiling by high throughput sequencing 8 samples Submitted 2025/08/12 Platform GPL34475
Summary
With their Janus-faced property of being at once dynamic and stable, epigenetic mechanisms have for long been proposed to act as potential molecular mnemonics, but a cell type-specific, locus-restricted and temporally controllable interrogation thereof has thus far been lacking. Over the past years, accumulating evidence has shown that memories are likely encoded in sparse populations of brain cells, so-called engrams, which have, with few exceptions, received little molecular attention. Here, we combine c-Fos driven engram tagging with CRISPR-based epigenetic editing in vivo to assess whether and the extent to which the epigenetic regulation of a single locus within engram cells can contribute to memory formation and storage. Focusing on the promoter region of Arc, a master regulator of learning and synaptic plasticity, we find that its temporally restricted epigenetic regulation within engram cells in the mouse dentate gyrus is both necessary and sufficient for memory retention after learning as well as for memory maintenance after recall. Furthermore, such epigenetic editing and its behavioral consequence is reversible, and capable of bidirectionally altering memory capacities even outside the labile phase of memory consolidation. Together, these findings suggest that epigenetic mechanisms are causally involved in regulating memory expression
Published in
Cell-type- and locus-specific epigenetic editing of memory expression
Coda DM, Watt L, Glauser L et al. · Nature genetics 2025 · PMID 41162785 · doi:10.1038/s41588-025-02368-y
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE299740_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1276400 and SRA study SRP592000. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 8 more — browse all 8 samples with per-sample file links →

Similar datasets

Search all mouse RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.