DRG tissue CSDE1-RIP and bulk RNA sequencing using sciatic nerve injured and uninjured AAV-Control or AAV-shGpr151 injected mice.
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE301322_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1284796 and SRA study SRP596426. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE301321 DRG tissue CSDE1-IP sequencing using sciatic nerve injured and uninjured mice. 12 samples shares drg, uninjured, sciatic, injured
- GSE301319 DRG tissue RiboTag and bulk RNA sequencing using sciatic nerve injured and uninjured mice. 12 samples shares drg, uninjured, sciatic, injured
- GSE301323 CSDE1-RIP and bulk RNA sequencing using primary DRG neurons infected with LV-control or LV-e5'UTR. 12 samples shares csde1-rip, drg
- GSE249687 Three-dimensional chromatin architecture in DRG neurons following sciatic nerve injury in WT and Rad21 KO mice. 52 samples shares drg, sciatic
- GSE279906 Role of ATF3 in the transcription of GI-SINEs (growth inducing B2-SINEs) in DRG neurons in response to sciatic nerve crush 34 samples shares drg, sciatic
- GSE230722 Sciatic nerve crush regulation of ribosome-associated RNA in DRG neurons 12 samples shares drg, sciatic
- GSE233824 Sciatic nerve crush regulation of RNA alternative poly-adenylation [DRGinjury_2019-QuantSeq_Rev_24h] 8 samples shares drg, sciatic
- GSE301324 RiboTag and bulk RNA sequencing using AAV-Control and AAV-shGpr151 infected sensory neurons. 12 samples shares aav-shgpr151, aav-control
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.