Biological processes in hind paw skin fibroblasts, keratinocytes and immune cells after PTX treatment (the short model)
RNA-seq (gene expression) · mouse · 35 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 35 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE302111_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1288541 and SRA study SRP599255. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 35 more — browse all 35 samples with per-sample file links →
- GSE302112 Biological processes in hind paws, dorsal root ganglia and spinal cord after PTX treatment (the short model) 51 samples shares ptx, biological, processes, treatment, short, hind
- GSE302022 Biological processes in Nav1.8-posistive DRG neurons after PTX treatment (the long model) in control (LTβR-fl/fl) and Na1.8-cre/LRβR-fl/fl mice 16 samples shares ptx, biological, processes, treatment
- GSE302020 Biological processes in hind paws, dorsal root ganglia and spinal cord of lymphotoxin-beta receptor (LTβR) agonist treated mice 24 samples shares biological, processes, hind
- GSE224275 Effects on the transcriptome of mouse embryonic fibroblasts after both Son overexpression and knockdown and treatment with 3μM nintedanib, 1μM ponatinib, 3μM proflavine hemisulfate, and 1μM pyrvinium pamoate 43 samples shares fibroblasts, treatment
- GSE13549 Fibroblasts associated with tumors refractory to anti-VEGF treatment 15 samples shares fibroblasts, treatment
- GSE229916 Pericytes and perivascular fibroblasts contribute to central nervous system fibrosis in a region dependent manner 832 samples shares fibroblasts
- GSE311156 Technical and biological sources of noise confound multiplexed enhancer AAV screening [dataset3] 797 samples shares biological
- GSE273413 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [FACS_pgWAT_iWAT_ASC] 143 samples shares fibroblasts
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.