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Sex-biased single-cell genetic landscape in mice hippocampus with sub-chronic variable stress

GSE303470 Mus musculus (mouse) Single-cell RNA-seq 4 samples Submitted 2026/09/16 Platform GPL24247
At a glance

Single-cell RNA-seq · mouse · 4 samples

What it is
Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
Organism
Mus musculus (mouse)
Samples
4 samples
Data you can get
A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Summary (written by the submitters)
Background: Major depressive disorder (MDD) exhibits a pronounced female bias, yet the underlying cellular mechanisms remain poorly understood. We investigated sex-specific molecular responses to stress in the mouse hippocampus at single-cell resolution to elucidate mechanisms driving female vulnerability. Methods: Male and female C57BL/6N mice were exposed to sub-chronic variable stress (SCVS).
Read the full summary ↓
Behavioral phenotyping (sucrose preference, novelty-suppressed feeding) assessed anhedonia. Hippocampal single-cell RNA sequencing (scRNA-seq; 10x Genomics Chromium) was performed on four cohorts: Male-Control, Male-SCVS, Female-Control, Female-SCVS. Sex-stratified differential gene expression, pathway enrichment (GO, KEGG), and mitochondrial gene analysis were conducted. Results: Female mice displayed significantly exacerbated anhedonia (reduced sucrose preference and novelty-suppressed feeding) and selective depletion of plasma serotonin (5-HT) following SCVS exposure, contrasting with minimal behavioral changes in males. Single-cell RNA sequencing of 31,256 hippocampal cells revealed profound sex-dimorphic transcriptional reprogramming: females exhibited a 3-fold greater number of differentially expressed genes (DEGs) than males with minimal overlap (9 shared DEGs). Key mechanistic findings included: (1) Female-biased dysregulation of maternally inherited mitochondrial genes (mt-Atp6 and mt-Co3 upregulated) specifically within oligodendrocytes, linking heightened oxidative stress susceptibility to female vulnerability; (2) Pan-cellular upregulation of the transcription factor Mef2c in females, contrasting with male-specific signatures (NRG-1 upregulated in astrocytes/cholinergic neurons; Slc6a11 downregulated in astrocytes). (3) Divergent pathway alterations, including suppressed oxytocin signaling (social reward) in females versus dysregulated kinase/phosphatase activity (synaptic plasticity) in males, with females further exhibiting coordinated suppression of glutamatergic transmission, astrocytic K⁺ buffering, and cell adhesion; (4) Stress-induced depletion of a baseline oligodendrocyte predominance in females, potentially disrupting hippocampal network synchronization underlying anhedonic behaviors. Conclusion: This study provides the first single-cell atlas of hippocampal sexual dimorphism in stress response. It identifies oligodendrocyte mitochondrial dysfunction, pan-cellular Mef2c upregulation, and oxytocin signaling suppression as central mechanisms underlying female-specific vulnerability to depression-like phenotypes. These findings reveal fundamentally distinct adaptive strategies between sexes and highlight novel, sex-stratified therapeutic targets for MDD.
This dataset
Download · which file do I need?

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE303470_RAW.tar (it can run to tens of gigabytes).

3 · Start from the raw reads

Raw sequencing reads

The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.

What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.

Also filed as BioProject PRJNA1295480 and SRA study SRP603119. Searching any of these in the dataset finder brings you back here.

Samples in this study

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