GM-CSF-derived DCs from BM and BM progenitors and Spleen(SP) in vitro
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- CD32b defines distinct dendritic cell lineages generated from the culture of bone marrow with GM-CSFFrontiers in immunology · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE304117_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1298938 and SRA study SRP604688. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9143997 BM GM-DCs (day 7) rep 1 BM GM-DCs (day 7)
- GSM9143998 BM GM-DCs (day 7) rep 2 BM GM-DCs (day 7)
- GSM9143999 BM GM-DCs (day 7) rep 3 BM GM-DCs (day 7)
- GSM9144000 BM GM-DCs (day 21) rep 1 BM GM-DCs (day 21)
- GSM9144001 BM GM-DCs (day 21) rep 2 BM GM-DCs (day 21)
- GSM9144002 BM GM-DCs (day 21) rep 3 BM GM-DCs (day 21)
- GSM9144003 MDP GM-DCs (day 7) rep 1 MDP GM-DCs (day 7)
- GSM9144004 MDP GM-DCs (day 7) rep 2 MDP GM-DCs (day 7)
- GSM9144005 MDP GM-DCs (day 7) rep 3 MDP GM-DCs (day 7)
- GSM9144006 MDP GM-DCs (day 21) rep 1 MDP GM-DCs (day 21)
- GSM9144007 MDP GM-DCs (day 21) rep 2 MDP GM-DCs (day 21)
- GSM9144008 MDP GM-DCs (day 21) rep 3 MDP GM-DCs (day 21)
- GSM9144009 GMP GM-DCs (day 21) rep 1 GMP GM-DCs (day 21)
- GSM9144010 GMP GM-DCs (day 21) rep 2 GMP GM-DCs (day 21)
- GSM9144011 GMP GM-DCs (day 21) rep 3 GMP GM-DCs (day 21)
- GSM9144012 SP GM-DCs (day 21) rep 1 SP GM-DCs (day 21)
- GSM9144013 SP GM-DCs (day 21) rep 2 SP GM-DCs (day 21)
- GSM9144014 SP GM-DCs (day 21) rep 3 SP GM-DCs (day 21)
- GSE286217 Transcriptional and epigenetic programs of in vitro-expanded HSPCs and their T cell progenitors progeny 59 samples shares progenitors, vitro
- GSE326003 The differentiation of myeloid progenitors is effected by cascading waves of coordinated gene expression that remodel cellular physiology in a characteristic sequence [RNA-seq] 165 samples shares progenitors
- GSE307881 Mouse Offspring Conceived by In Vitro Fertilization Exhibit Accelerated Reproductive Aging Through Early Ovarian Failure 151 samples shares vitro
- GSE75111 Single-cell transcriptional profiling of Th17 cells, differentiated in vitro for 48h [TGFB1_IL6-48h-IL-17A/GFP+] 151 samples shares vitro
- GSE225317 Trophectoderm biopsies of blastocysts for preimplantation genetic testing following in vitro fertilization and embryo culture increases epigenetic dysregulation in a mouse model [RNA-seq] 110 samples shares vitro
- GSE303258 Mouse placentae generated by in vitro fertilization exhibit altered gene expression, activated hypoxia responses and reduced fitness. 96 samples shares vitro
- GSE289311 Erythropoietin Exposure Impairs B Cell Development and Promotes Myeloid-Imprinted Biphenotypic Progenitors 96 samples shares progenitors
- GSE260623 Germline ELP1 deficiency sensitizes cerebellar granule neuron progenitors to SHH medulloblastoma [bulkRNA] 91 samples shares progenitors
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.