Kdm6b-mediated epigenetic coordination of temporal precision during motor neuron differentiation
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 47 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 47 samples: 12 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE306766_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1312061 and SRA study SRP610090. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 36 samples.
How we read this: 12 replicated groups read from 47 sample titles; they account for 36 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9184482 RNA-seq in D4 biol rep 1 RNA-seq in D4 biol
- GSM9184483 RNA-seq in D4 biol rep 2 RNA-seq in D4 biol
- GSM9184484 RNA-seq in D4 biol rep 3 RNA-seq in D4 biol
- GSM9184485 RNA-seq in D4H8 biol rep 1 RNA-seq in D4H8 biol
- GSM9184486 RNA-seq in D4H8 biol rep 2 RNA-seq in D4H8 biol
- GSM9184487 RNA-seq in D4H8 biol rep 3 RNA-seq in D4H8 biol
- GSM9184488 RNA-seq in D4H8 GSKJ4 biol rep 1 RNA-seq in D4H8 GSKJ4 b…
- GSM9184489 RNA-seq in D4H8 GSKJ4 biol rep 2 RNA-seq in D4H8 GSKJ4 b…
- GSM9184490 RNA-seq in D4H8 GSKJ4 biol rep 3 RNA-seq in D4H8 GSKJ4 b…
- GSM9184491 RNA-seq in D5 biol rep 1 RNA-seq in D5 biol
- GSM9184492 RNA-seq in D5 biol rep 2 RNA-seq in D5 biol
- GSM9184493 RNA-seq in D5 biol rep 3 RNA-seq in D5 biol
- GSM9184494 RNA-seq in D5 GSKJ4 biol rep 1 RNA-seq in D5 GSKJ4 biol
- GSM9184495 RNA-seq in D5 GSKJ4 biol rep 2 RNA-seq in D5 GSKJ4 biol
- GSM9184496 RNA-seq in D5 GSKJ4 biol rep 3 RNA-seq in D5 GSKJ4 biol
- GSM9184497 RNA-seq in D6 biol rep 1 RNA-seq in D6 biol
- GSM9184498 RNA-seq in D6 biol rep 2 RNA-seq in D6 biol
- GSM9184499 RNA-seq in D6 biol rep 3 RNA-seq in D6 biol
- GSM9184500 RNA-seq in D6 GSKJ4 biol rep 1 RNA-seq in D6 GSKJ4 biol
- GSM9184501 RNA-seq in D6 GSKJ4 biol rep 2 RNA-seq in D6 GSKJ4 biol
- GSM9184502 RNA-seq in D6 GSKJ4 biol rep 3 RNA-seq in D6 GSKJ4 biol
- GSM9185895 Cut&Run-seq Kdm6b in D4 Cut&Run-seq Kdm6b in D
- GSM9185896 Cut&Run-seq Kdm6b in D4H8
- GSM9185897 Cut&Run-seq Kdm6b in D5 Cut&Run-seq Kdm6b in D
- GSM9185898 Cut&Run-seq Kdm6b in D6 Cut&Run-seq Kdm6b in D
- GSM9185899 Cut&Run-seq Neurod1 in D5
- GSM9185900 Cut&Run-seq Cux1/2 in D6
- GSM9185901 Cut&Tag-seq H3K27me3 in D4 Cut&Tag-seq H3K27me3 in…
- GSM9185902 Cut&Tag-seq H3K27me3 in D4H8
- GSM9185903 Cut&Tag-seq H3K27me3 in D5 Cut&Tag-seq H3K27me3 in…
- GSM9185904 Cut&Tag-seq H3K27me3 in D6 Cut&Tag-seq H3K27me3 in…
- GSM9185905 Cut&Tag-seq H3K27ac in D4 Cut&Tag-seq H3K27ac in D
- GSM9185906 Cut&Tag-seq H3K27ac in D4H8
- GSM9185907 Cut&Tag-seq H3K27ac in D5 Cut&Tag-seq H3K27ac in D
- GSM9185908 Cut&Tag-seq H3K27ac in D6 Cut&Tag-seq H3K27ac in D
- GSM9185909 Cut&Tag-seq H3K4me1 in D4 Cut&Tag-seq H3K4me1 in D
- GSM9185910 Cut&Tag-seq H3K4me1 in D4H8
- GSM9185911 Cut&Tag-seq H3K4me1 in D5 Cut&Tag-seq H3K4me1 in D
- GSM9185912 Cut&Tag-seq H3K4me1 in D6 Cut&Tag-seq H3K4me1 in D
- GSM9185913 Cut&Tag-seq H3K4me3 in D4 Cut&Tag-seq H3K4me3 in D
+ 7 more — browse all 47 samples with per-sample file links →
- GSE305767 Kdm6b-mediated epigenetic coordination of temporal precision during motor neuron differentiation [RNA-seq] 21 samples shares kdm6b-mediated, coordination, epigenetic, precision, temporal, neuron, motor
- GSE243943 Spatio-temporal X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing 127 samples shares epigenetic, temporal
- GSE243942 Spatio-temporal X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing [RNA-seq] 125 samples shares epigenetic, temporal
- GSE289108 Neurons undergo IFNγ-driven persistent epigenetic shifts and synaptic remodeling in the inflamed brain [ChIP-Seq] 57 samples shares epigenetic, neuron
- GSE275917 Nup153 regulates neuronal responsiveness through HDAC1-mediated epigenetic modulation [ChIP-seq] 17 samples shares epigenetic, neuron
- GSE281035 PAR3-mediated coordination of hepatocyte proliferation, maturation, and architecture in liver development and regeneration 128 samples shares coordination
- GSE292063 Pre-existing epigenetic state and differential NF-kB activation shape type 2 immune cell responses 61 samples shares epigenetic
- GSE286217 Transcriptional and epigenetic programs of in vitro-expanded HSPCs and their T cell progenitors progeny 59 samples shares epigenetic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.