← BioTransfer GEO Dataset Finder
GEO series

Runx1 in Postn-expressing fibroblasts exacerbates adverse cardiac remodeling post myocardial infarction

GSE306883 Mus musculus Expression profiling by high throughput sequencing 6 samples Submitted 2026/01/14 Platform GPL34290
Summary
Runx1 is strongly induced in the heart after acute injury and in chronic disease settings. Its expression negatively correlates with outcomes, and past work has shown a protective effect when Runx1 is inhibited through a variety of experimental means. We sought to establish the cell type(s) responsible for Runx1-dependent adverse remodeling following infarction. Using immunostaining for RUNX1 along with existing single cell RNA sequencing data sets, we established which cell types express Runx1 and prioritized two from this list – cardiomyocytes and fibroblasts. Cre drivers for the respective cell populations were paired with a Runx1 floxed allele to generate inducible, cell-type specific knockout mice. Following myocardial infarction induced by permanent ligation, mice were assessed for functional recovery by echocardiography and histological measurements, including scar size, cardiomyocyte dimension, and cell proliferation. Detailed transcriptomic analysis was used to assess mechanism of action. In contrast to existing literature, we did not observe a measurable impact of cardiomyocyte-specific loss of Runx1 on heart function or histology following myocardial infarction when compared to Cre-positive controls. On the other hand, loss of Runx1 in the Postn-expressing activated fibroblast population resulted in a protective effect on heart function seen as early as 3 days post-infarction and maintained until the 56-day experimental endpoint. These functional benefits were accompanied by smaller scars, reduced cardiomyocyte hypertrophy, and a reduction of activated fibroblasts progressing to an SMA-positive myofibroblast. Overall, we demonstrate Runx1 expression in activated fibroblasts drives adverse remodeling phenotypes following myocardial infarction.
Published in
Runx1 in Postn-Expressing Fibroblasts But Not Cardiomyocytes Exacerbates Adverse Cardiac Remodeling Post-Myocardial Infarction
Akins KA, Arkatkar A, Flinn MA et al. · JACC. Basic to translational science 2026 · PMID 41534459 · doi:10.1016/j.jacbts.2025.101455
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE306883_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1312852 and SRA study SRP614792. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 6 more — browse all 6 samples with per-sample file links →

Similar datasets

Search all mouse RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.