Formylpeptide Receptor Activation Attenuates Renovascular Remodeling in Neurogenic Hypertension (Kidney)
RNA-seq (gene expression) · mouse · 19 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 19 samples: 19 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE333587_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1471624 and SRA study SRP704444. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 10 samples read as cases, 9 as controls.
How we read this: Read from 19 sample titles: 19 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9769578 BPH962, BPH/2J, vehicle, Kidney
- GSM9769579 BPH964, BPH/2J, vehicle, Kidney
- GSM9769580 BPH966, BPH/2J, Cmpd17b-treated Kidney
- GSM9769581 BPH968, BPH/2J, Cmpd17b-treated Kidney
- GSM9769582 BPH976, BPH/2J, Cmpd17b-treated Kidney
- GSM9769583 BPH978, BPH/2J, Cmpd17b-treated Kidney
- GSM9769584 BPH986, BPH/2J, vehicle, Kidney
- GSM9769585 BPH988, BPH/2J, vehicle, Kidney
- GSM9769586 BPH990, BPH/2J, Cmpd17b-treated Kidney
- GSM9769587 BPH998, BPH/2J, vehicle, Kidney
- GSM9769588 BPN1003, BPN/3J, vehicle, Kidney
- GSM9769589 BPN965, BPN/3J, Cmpd17b-treated Kidney
- GSM9769590 BPN967, BPN/3J, Cmpd17b-treated Kidney
- GSM9769591 BPN969, BPN/3J, vehicle, Kidney
- GSM9769592 BPN971, BPN/3J, Cmpd17b-treated Kidney
- GSM9769593 BPN973, BPN/3J, vehicle, Kidney
- GSM9769594 BPN979, BPN/3J, Cmpd17b-treated Kidney
- GSM9769595 BPN985, BPN/3J, vehicle, Kidney
- GSM9769596 BPN999, BPN/3J, Cmpd17b-treated Kidney
- GSE333586 Formylpeptide Receptor Activation Attenuates Renovascular Remodeling in Neurogenic Hypertension (Left Ventricle) 26 samples shares formylpeptide, renovascular, hypertension, activation, attenuates, remodeling, neurogenic, receptor
- GSE319612 Rothia mucilaginosa Alleviates Constipation through Gut Microbiota Remodeling and Neuroactive Pathway Activation 26 samples shares activation, remodeling
- GSE267270 Synthetic trimeric Interleukin-6 receptor complexes with a STAT3 phosphorylation dominated activation profile 16 samples shares activation, receptor
- GSE327565 Sustained Yap/Taz activation promotes aberrant alveolar epithelial cell differentiation and drives persistent fibrotic remodeling 14 samples shares activation, remodeling
- GSE303181 STC-1 Attenuates Scar Formation via PI3K/AKT Pathway Activation and Immune Modulation 12 samples shares activation, attenuates
- GSE293372 Coordinate tumor-antigen uptake and dendritic cell activation by chimeric antigen receptors. [RNA-seq] 12 samples shares activation, receptor
- GSE330351 Ferritin-mediated iron homeostasis regulates fibroblast activation and shapes post-infarction cardiac remodeling 9 samples shares activation, remodeling
- GSE266024 Nrf2-mediated chromatin activation of hyperosmotic response genes attenuates heat-induced renal injury 42 samples shares activation, attenuates
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.