The human mitochondrial transcriptome
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 7 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 7 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE30772_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA144321 and SRA study SRP007508. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 7 more — browse all 7 samples with per-sample file links →
- GSE224689 Regulatory principles of human mitochondrial gene expression revealed by kinetic analysis of the RNA life cycle. 113 samples shares mitochondrial
- GSE224662 Regulatory principles of human mitochondrial gene expression revealed by kinetic analysis of the RNA life cycle 98 samples shares mitochondrial
- GSE302582 Sprint interval exercise drives a unique transcriptional mitochondrial stress response in humans 72 samples shares mitochondrial
- GSE266943 A humanized neuronal model system reveals key roles for the trace element manganese in neuronal endocytosis, calcium flux and mitochondrial bioenergetics 48 samples shares mitochondrial
- GSE335748 The Core Subunit NDUFS2 in Mitochondrial Complex I is Critical to Oxygen Sensing in Human Ductus Arteriosus Smooth Muscle Cells 30 samples shares mitochondrial
- GSE325454 Mitochondrial OXPHOS restricts SARS-CoV-2 replication 148 samples shares mitochondrial
- GSE327957 Transcriptome profiling of induced sputum identified up-regulated TNF-α/NF-κB signaling and down-regulated mitochondrial respiratory chain function in post-infectious Bronchiolitis obliterans 17 samples shares mitochondrial
- GSE301408 Mitochondrial double-stranded RNA triggers chronic stress in aged neurons 100 samples shares mitochondrial
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.