Resf1 is required for normal placental development and configuration of trophoblast cell-specific heterochromatin [ChIP-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 25 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 25 samples: 10 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE308516_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1330804 and SRA study SRP621926. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 25 samples.
How we read this: 10 replicated groups read from 25 sample titles; they account for 25 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9247286 H3K9me3 ChIP-seq in WT Placenta rep1 H3K9me3 ChIP-seq in WT …
- GSM9247287 H3K9me3 ChIP-seq in WT Placenta rep2 H3K9me3 ChIP-seq in WT …
- GSM9247288 H3K9me3 ChIP-seq in WT Placenta rep3 H3K9me3 ChIP-seq in WT …
- GSM9247289 H3K9me3 ChIP-seq in KO Placenta rep1 H3K9me3 ChIP-seq in KO …
- GSM9247290 H3K9me3 ChIP-seq in KO Placenta rep2 H3K9me3 ChIP-seq in KO …
- GSM9247291 H3K9me3 ChIP-seq in Het TSC rep1 H3K9me3 ChIP-seq in Het…
- GSM9247292 H3K9me3 ChIP-seq in Het TSC rep2 H3K9me3 ChIP-seq in Het…
- GSM9247293 H3K9me3 ChIP-seq in Het TSC rep3 H3K9me3 ChIP-seq in Het…
- GSM9247294 H3K9me3 ChIP-seq in KO TSC rep1 H3K9me3 ChIP-seq in KO …
- GSM9247295 H3K9me3 ChIP-seq in KO TSC rep2 H3K9me3 ChIP-seq in KO …
- GSM9247296 H3K9me3 ChIP-seq in KO TSC rep3 H3K9me3 ChIP-seq in KO …
- GSM9247297 H3K9me3 ChIP-seq in Het D-TSC rep1 H3K9me3 ChIP-seq in Het…
- GSM9247298 H3K9me3 ChIP-seq in Het D-TSC rep2 H3K9me3 ChIP-seq in Het…
- GSM9247299 H3K9me3 ChIP-seq in Het D-TSC rep3 H3K9me3 ChIP-seq in Het…
- GSM9247300 H3K9me3 ChIP-seq in KO D-TSC rep1 H3K9me3 ChIP-seq in KO …
- GSM9247301 H3K9me3 ChIP-seq in KO D-TSC rep2 H3K9me3 ChIP-seq in KO …
- GSM9247302 H3K9me3 ChIP-seq in KO D-TSC rep3 H3K9me3 ChIP-seq in KO …
- GSM9247303 H3K9me3 ChIP-seq in Setdb1-Ctr TSC rep1 H3K9me3 ChIP-seq in Set…
- GSM9247304 H3K9me3 ChIP-seq in Setdb1-Ctr TSC rep2 H3K9me3 ChIP-seq in Set…
- GSM9247305 H3K9me3 ChIP-seq in Setdb1-KD TSC rep1 H3K9me3 ChIP-seq in Set…
- GSM9247306 H3K9me3 ChIP-seq in Setdb1-KD TSC rep2 H3K9me3 ChIP-seq in Set…
- GSM9247307 H3.1 ChIP-seq in Het TSC rep1 H3.1 ChIP-seq in Het TSC
- GSM9247308 H3.1 ChIP-seq in Het TSC rep2 H3.1 ChIP-seq in Het TSC
- GSM9247309 H3.1 ChIP-seq in KO TSC rep1 H3.1 ChIP-seq in KO TSC
- GSM9247310 H3.1 ChIP-seq in KO TSC rep2 H3.1 ChIP-seq in KO TSC
- GSE308515 Resf1 is required for normal placental development and configuration of trophoblast cell-specific heterochromatin [RNA-seq] 17 samples shares resf1, heterochromatin, configuration, cell-specific, trophoblast, placental, required
- GSE231845 The H3K9me3 heterochromatin integrity and function are sustained by H3K9me3 methyltransferases-HP1 dependencies [ChIP-Seq] 216 samples shares heterochromatin, chip-seq
- GSE287375 CTCF-RNA interactions orchestrate cell-specific chromatin loop organization [ChIP-seq] 54 samples shares cell-specific, chip-seq
- GSE241668 Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [ChIP-Seq] 48 samples shares configuration, chip-seq
- GSE261181 Regulation of heterochromatin formation and tumor suppression in leukemia by IKAROS, HDAC1 and EZH2 [ChIP-seq] 28 samples shares heterochromatin, chip-seq
- GSE287032 H3K27me3 and the PRC1-H2AK119ub pathway cooperatively maintain heterochromatin and transcriptional silencing after the loss of H3K9 methylation [ChIP-seq] 20 samples shares heterochromatin, chip-seq
- GSE242383 PHF2 maintains neural progenitor genome stability by preserving pericentric heterochromatin integrity (ChIP-Seq) 19 samples shares heterochromatin, chip-seq
- GSE212153 Requirements for Establishment and Epigenetic Stability of Mammalian Heterochromatin [ChIP-Seq] 18 samples shares heterochromatin, chip-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.