NMuMG PBRM1 ChIP-seq
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 47 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 47 samples: 40 distinct titles, 7 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE310185_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1365246 and SRA study SRP645486. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 47 sample titles: 40 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9290698 Control-Phf10_ChIPseq _Untreated_Replicate 1
- GSM9290699 Control-Brg1_ChIPseq _Untreated
- GSM9290700 Control-INPUT_Untreated_Replicate 1
- GSM9290701 Control-Phf10_ChIPseq _24h TGFβ1_Replicate 1
- GSM9290702 Control-INPUT_24h TGFβ1_Replicate 1
- GSM9290703 Control-Phf10_ChIPseq _48h TGFβ1_Replicate 1
- GSM9290704 Control-INPUT_48h TGFβ1_Replicate 1
- GSM9290705 Control-Phf10_ChIPseq _Untreated_Replicate 2
- GSM9290706 Control-INPUT_Untreated_Replicate 2
- GSM9290707 Control-Phf10_ChIPseq _48h TGFβ1_Replicate 2
- GSM9290708 Control-INPUT_48h TGFβ1_Replicate 2
- GSM9290709 Control-Atf3_ChIPseq _Untreated
- GSM9290710 Control-Atf3_ChIPseq _24h TGFβ1
- GSM9290711 Control-INPUT_24h TGFβ1_Replicate 3
- GSM9290712 Control-Atf3_ChIPseq _48h TGFβ1
- GSM9290713 Pbrm1 KO-Phf10_ChIPseq _Untreated_Replicate 1
- GSM9290714 Pbrm1 KO-INPUT_Untreated_Replicate 1
- GSM9290715 Pbrm1 KO-Phf10_ChIPseq _48h TGFβ1_Replicate 1
- GSM9290716 Pbrm1 KO-INPUT_48h TGFβ1_Replicate 1
- GSM9290717 Pbrm1 KO-Atf3_ChIPseq _Untreated
- GSM9290718 Pbrm1 KO-Atf3_ChIPseq _24h TGFβ1
- GSM9290719 Pbrm1 KO-INPUT_24h TGFβ1_Replicate 3
- GSM9290720 Pbrm1 KO-Atf3_ChIPseq _48h TGFβ1
- GSM9290721 Control-Fosl2_ChIPseq _Untreated
- GSM9290722 Control-Fosl2_ChIPseq _48h TGFβ1
- GSM9290723 Control-Fosb_ChIPseq _Untreated
- GSM9290724 Control-Fosb_ChIPseq _48h TGFβ1
- GSM9290725 Control_FA-INPUT_Untreated_Replicate 1
- GSM9290726 Control_FA-INPUT_48h TGFβ1_Replicate 1
- GSM9290727 Pbrm1 KO-Fosl2_ChIPseq _Untreated
- GSM9290728 Pbrm1 KO-Fosl2_ChIPseq _48h TGFβ1
- GSM9290729 Pbrm1 KO-Fosb_ChIPseq _Untreated
- GSM9290730 Pbrm1 KO-Fosb_ChIPseq _48h TGFβ1
- GSM9290731 Pbrm1 KO_FA-INPUT_Untreated_Replicate 1
- GSM9290732 Pbrm1 KO_FA-INPUT_48h TGFβ1_Replicate 1
- GSM9290733 Control-H3K4me3_ChIPseq_Untreated
- GSM9290734 Control-H3K4me3_ChIPseq_48h TGFβ1
- GSM9290735 Control-H3K4me1_ChIPseq_Untreated
- GSM9290736 Control-H3K4me1_ChIPseq_48h TGFβ1
- GSM9290737 Control-H3K27ac_ChIPseq_Untreated
+ 7 more — browse all 47 samples with per-sample file links →
- GSE312302 NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq 171 samples shares pbrm1, chip-seq, nmumg
- GSE298752 NMuMG PBRM1 ATAC-seq 24 samples shares pbrm1, nmumg
- GSE269428 PBRM1 RNA-seq 60 samples shares pbrm1
- GSE261221 Scaffolding element rewires genome architecture during differentiation at the Zfp608 locus (ChIP-Seq) 189 samples shares chip-seq
- GSE289642 Noncanonical PRC2 chromatin association reveals a key role of EZHIP in intergenerational epigenetic memory transition [ChIP-Seq, Cut & Run] 107 samples shares chip-seq
- GSE303384 Mechanism of maintenance and establishment of repression by the Mtg16 tumor suppressor [CUT&RUN, ChIP-Seq] 92 samples shares chip-seq
- GSE243959 The mitotic STAG3–cohesin complex shapes male germline nucleome [ChIP-seq] 92 samples shares chip-seq
- GSE309572 MLL2 facilitates long-range gene regulation through LINE1 elements [ChIP-Seq] 89 samples shares chip-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.