Transcriptome analysis (bulk RNAseq) of FlncKO-C2C12 during myogenic differentiation
RNA-seq (gene expression) · mouse · 39 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 39 samples: 10 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE312993_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1378076 and SRA study SRP653687. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 39 samples.
How we read this: 10 replicated groups read from 39 sample titles; they account for 39 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9358728 C2C12, WT, day0, rep3 C2C12, WT, day0,
- GSM9358729 C2C12, WT, day0, rep1 C2C12, WT, day0,
- GSM9358730 C2C12, WT, day0, rep4 C2C12, WT, day0,
- GSM9358731 C2C12, WT, day0, rep5 C2C12, WT, day0,
- GSM9358732 C2C12, WT, day1, rep3 C2C12, WT, day1,
- GSM9358733 C2C12, WT, day1, rep1 C2C12, WT, day1,
- GSM9358734 C2C12, WT, day1, rep4 C2C12, WT, day1,
- GSM9358735 C2C12, WT, day1, rep5 C2C12, WT, day1,
- GSM9358736 C2C12, WT, day2, rep3 C2C12, WT, day2,
- GSM9358737 C2C12, WT, day2, rep1 C2C12, WT, day2,
- GSM9358738 C2C12, WT, day2, rep4 C2C12, WT, day2,
- GSM9358739 C2C12, WT, day2, rep5 C2C12, WT, day2,
- GSM9358740 C2C12, WT, day4, rep3 C2C12, WT, day4,
- GSM9358741 C2C12, WT, day4, rep1 C2C12, WT, day4,
- GSM9358742 C2C12, WT, day4, rep4 C2C12, WT, day4,
- GSM9358743 C2C12, WT, day4, rep5 C2C12, WT, day4,
- GSM9358744 C2C12, WT, day6, rep3 C2C12, WT, day6,
- GSM9358745 C2C12, WT, day6, rep1 C2C12, WT, day6,
- GSM9358746 C2C12, WT, day6, rep4 C2C12, WT, day6,
- GSM9358747 C2C12, WT, day6, rep5 C2C12, WT, day6,
- GSM9358748 C2C12, FlncKO, day0, rep3 C2C12, FlncKO, day0,
- GSM9358749 C2C12, FlncKO, day0, rep1 C2C12, FlncKO, day0,
- GSM9358750 C2C12, FlncKO, day0, rep4 C2C12, FlncKO, day0,
- GSM9358751 C2C12, FlncKO, day0, rep5 C2C12, FlncKO, day0,
- GSM9358752 C2C12, FlncKO, day1, rep3 C2C12, FlncKO, day1,
- GSM9358753 C2C12, FlncKO, day1, rep1 C2C12, FlncKO, day1,
- GSM9358754 C2C12, FlncKO, day1, rep4 C2C12, FlncKO, day1,
- GSM9358755 C2C12, FlncKO, day1, rep5 C2C12, FlncKO, day1,
- GSM9358756 C2C12, FlncKO, day2, rep3 C2C12, FlncKO, day2,
- GSM9358757 C2C12, FlncKO, day2, rep1 C2C12, FlncKO, day2,
- GSM9358758 C2C12, FlncKO, day2, rep5 C2C12, FlncKO, day2,
- GSM9358759 C2C12, FlncKO, day4, rep3 C2C12, FlncKO, day4,
- GSM9358760 C2C12, FlncKO, day4, rep1 C2C12, FlncKO, day4,
- GSM9358761 C2C12, FlncKO, day4, rep4 C2C12, FlncKO, day4,
- GSM9358762 C2C12, FlncKO, day4, rep5 C2C12, FlncKO, day4,
- GSM9358763 C2C12, FlncKO, day6, rep3 C2C12, FlncKO, day6,
- GSM9358764 C2C12, FlncKO, day6, rep1 C2C12, FlncKO, day6,
- GSM9358765 C2C12, FlncKO, day6, rep4 C2C12, FlncKO, day6,
- GSM9358766 C2C12, FlncKO, day6, rep5 C2C12, FlncKO, day6,
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.