Pharmacological inhibition of GLUT1 alleviates fulminant hepatitis by restraining macrophage-induced inflammatory cascades and restoring metabolic homeostasis
RNA-seq (gene expression) · mouse · 9 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 9 samples: 3 × Ctrl vs 3 × D-gal-LPS vs 3 × WZB-D-gal-LPSGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE325494_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1440342 and SRA study SRP685378. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 9 samples.
How we read this: 3 replicated groups read from 9 sample titles; they account for 9 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9604951 Ctrl1 Ctrl
- GSM9604952 Ctrl2 Ctrl
- GSM9604953 Ctrl3 Ctrl
- GSM9604954 D-gal-LPS1 D-gal-LPS
- GSM9604955 D-gal-LPS2 D-gal-LPS
- GSM9604956 D-gal-LPS3 D-gal-LPS
- GSM9604957 WZB-D-gal-LPS1 WZB-D-gal-LPS
- GSM9604958 WZB-D-gal-LPS2 WZB-D-gal-LPS
- GSM9604959 WZB-D-gal-LPS3 WZB-D-gal-LPS
- GSE318028 Pharmacological inhibition of FKBP51 mitigates early life adversity-induced social deficits 246 samples shares pharmacological, inhibition
- GSE276967 Sex-specific molecular signature of mouse podocytes in homeostasis and in response to pharmacological challenge with rapamycin 20 samples shares pharmacological, homeostasis
- GSE288224 Transient Pharmacological Inhibition of SUMOylation during Pregnancy Induces Craniofacial Malformations in Offspring Mice 18 samples shares pharmacological, inhibition
- GSE304090 Pharmacological inhibition of the epigenetic enzyme EZH2 attenuates cardiac dysfunction and mitigates lipid metabolism perturbations in a murine model of myocardial infarction 15 samples shares pharmacological, inhibition
- GSE318212 Serotonin transporter downregulation is associated with aortic stenosis, and early profibrotic remodeling is mitigated by pharmacological inhibition of HTR2B receptor 14 samples shares pharmacological, inhibition
- GSE318448 Pharmacological elevation of lactate alleviates sepsis via histone lactylation-induced IL-10 production 10 samples shares pharmacological, alleviates
- GSE298870 Pharmacological inhibition of sclerostin protects bone from B-cell acute lymphoblastic leukemia-mediated destruction 8 samples shares pharmacological, inhibition
- GSE299752 Sepsis–induced skeletal muscle wasting is ameliorated by the pharmacological inhibition of STAT3 signaling in mice [RNA-seq] 6 samples shares pharmacological, inhibition
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.