Transcriptional changes in GV oocytes upon maternal ZFPOBI deletion.
RNA-seq (gene expression) · mouse · 14 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 14 samples: 7 × Knock out GV oocyte vs 7 × Wildtype GV oocyteGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE326965_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1448005 and SRA study SRP689177. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 14 samples.
How we read this: 2 replicated groups read from 14 sample titles; they account for 14 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9644506 Knock out GV oocyte Replicate 1 Knock out GV oocyte
- GSM9644507 Knock out GV oocyte Replicate 2 Knock out GV oocyte
- GSM9644508 Knock out GV oocyte Replicate 3 Knock out GV oocyte
- GSM9644509 Knock out GV oocyte Replicate 4 Knock out GV oocyte
- GSM9644510 Knock out GV oocyte Replicate 5 Knock out GV oocyte
- GSM9644511 Knock out GV oocyte Replicate 6 Knock out GV oocyte
- GSM9644512 Knock out GV oocyte Replicate 7 Knock out GV oocyte
- GSM9644513 Wildtype GV oocyte Replicate 1 Wildtype GV oocyte
- GSM9644514 Wildtype GV oocyte Replicate 2 Wildtype GV oocyte
- GSM9644515 Wildtype GV oocyte Replicate 3 Wildtype GV oocyte
- GSM9644516 Wildtype GV oocyte Replicate 4 Wildtype GV oocyte
- GSM9644517 Wildtype GV oocyte Replicate 5 Wildtype GV oocyte
- GSM9644518 Wildtype GV oocyte Replicate 6 Wildtype GV oocyte
- GSM9644519 Wildtype GV oocyte Replicate 7 Wildtype GV oocyte
- GSE196745 Changes in Ikaros binding and histone-modifications upon oncogenic β-catenin activation [ChIP-Seq] 30 samples shares changes, upon
- GSE264045 Changes in sites of open chromatin in muscle stem cells that occur upon knockout of TRF2 7 samples shares changes, upon
- GSE241770 ACSS2 mediates an epigenetic pathway to regulate maternal Beta-cell adaptation and progression of gestational diabetes (scRNA-Seq) 7899 samples shares maternal
- GSE265909 yHSC and oHSC scRNAseq with oHSC AThi ATlo Index Sorting. Assessing the transcriptional changes associated with autophagy engagement in old hematopoietic stem cells at single cell resolution. [scRNA-Seq] 563 samples shares changes
- GSE282096 Diminished transcriptional activity and splicing changes drive gene length-biased rewiring in the aging transcriptome (RNA-Seq) 94 samples shares changes
- GSE252343 Hofbauer cells and fetal brain microglia share transcriptional profiles and responses to maternal diet-induced obesity 34 samples shares maternal
- GSE256002 Comparison of transcriptional changes in regenerating mice livers at baseline and 24-48 hours post 70% partial hepatectomy with or without etomoxir treatment 27 samples shares changes
- GSE233837 Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain 24 samples shares changes
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.