TET2_x001E_mediated PTPN6 demethylation drives post_x001E_burn immune paralysis and AAV_x001E_CRISPRi targeting PTPN6 improves secondary bloodstream infection outcome
DNA methylation · mouse · 12 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 6 × burn vs 6 × shamGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE327575_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA1451243 and SRA study SRP690658. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 2 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9661735 burn1 burn
- GSM9661736 burn2 burn
- GSM9661737 burn3 burn
- GSM9661738 burn4 burn
- GSM9661739 burn5 burn
- GSM9661740 burn6 burn
- GSM9661741 sham1 sham
- GSM9661742 sham2 sham
- GSM9661743 sham3 sham
- GSM9661744 sham4 sham
- GSM9661745 sham5 sham
- GSM9661746 sham6 sham
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- GSE278331 Effect of an AAV1 containing an sh-RNA targeting Angptl2 on the hypocampus of male and female atherosclerotic mice 12 samples shares aav, targeting
- GSE235987 Enhancer-AAVs allow genetic access to diverse populations of astrocytes and oligodendrocytes across species 2040 samples shares aav
- GSE311154 Technical and biological sources of noise confound multiplexed enhancer AAV screening [dataset2] 904 samples shares aav
- GSE311152 Technical and biological sources of noise confound multiplexed enhancer AAV screening [dataset1] 800 samples shares aav
- GSE311156 Technical and biological sources of noise confound multiplexed enhancer AAV screening [dataset3] 797 samples shares aav
- GSE280991 Partial restoration of the mitochondrial dysfunction by AAV-Ant1 (Slc25a4) transduction protects against dilated cardiomyopathy in Slc25a4-/- plus mtDNA mutant mice 115 samples shares aav
- GSE266332 Characterization of the ocular inflammatory response to AAV reveals divergence by sex and age 64 samples shares aav
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.