The scaffolding protein AKAP79/150 shapes innate immune responses to allergen
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 6 × Vehicle vs 4 × House dust mite treated vs 2 × Hose dust mite treatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE334783_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1476490 and SRA study SRP707991. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 6 samples read as cases, 6 as controls.
How we read this: 3 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9797044 Hose dust mite treated 1 Hose dust mite treated
- GSM9797045 Hose dust mite treated 2 Hose dust mite treated
- GSM9797046 House dust mite treated 3 House dust mite treated
- GSM9797047 House dust mite treated 4 House dust mite treated
- GSM9797048 House dust mite treated 5 House dust mite treated
- GSM9797049 House dust mite treated 6 House dust mite treated
- GSM9797050 Vehicle 1 Vehicle
- GSM9797051 Vehicle 2 Vehicle
- GSM9797052 Vehicle 3 Vehicle
- GSM9797053 Vehicle 4 Vehicle
- GSM9797054 Vehicle 5 Vehicle
- GSM9797055 Vehicle 6 Vehicle
- GSE273131 A developing HPA axis permits neonatal immune sensitivity to common allergens 34 samples shares allergen
- GSE244619 ZFP36-family RNA-binding proteins in regulatory T cells reinforce immune homeostasis [bulk RNA-seq] 24 samples shares protein
- GSE232264 Hepatocytes coordinate immune evasion in cancer via release of serum amyloid A proteins [Liver] 18 samples shares protein
- GSE261415 Muscleblind-like proteins are novel modulators of the tumor-immune microenvironment 12 samples shares protein
- GSE270727 Analysis of striatal zinc finger protein (ZFP) repression of mutant Huntingtin (HTT) in the zQ175DN knock-in mouse model of Huntington's disease (bulk RNA-seq) 233 samples shares protein
- GSE270728 Analysis of striatal zinc finger protein (ZFP) repression of mutant Huntingtin (HTT) in the zQ175DN knock-in mouse model of Huntington's disease (snRNA-seq) 120 samples shares protein
- GSE260522 Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development [RNA-seq] 86 samples shares protein
- GSE271971 Pulmonary microvascular endothelial cells support alveolar epithelial growth via bone morphogenetic protein 6 secretion 72 samples shares protein
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.