ChIP-seq profiling of RBBP4 and P300 occupancy after CSNK2B knockdown in small cell lung cancer cells
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 8 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Topic
- Small cell lung cancerThis series is part of our curated briefing on it.
- Samples
- 8 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE337244_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1484549 and SRA study SRP714352. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 8 more — browse all 8 samples with per-sample file links →
- GSE337503 RNA-seq analysis of CSNK2B and P300 knockdown in NCI-H69 small cell lung cancer cells 9 samples same disease briefing · shares csnk2b, p300, knockdown, small, lung
- GSE297358 Loss of NOTCH2 Creates a TRIM28-Dependent Vulnerability in Small Cell Lung Cancer [ChIP-seq] 29 samples same disease briefing · shares chip-seq, small, lung
- GSE259272 Therapeutic targeting ERRγ suppresses metastasis via extracellular matrix remodeling in small cell lung cancer (ChIP-Seq) 4 samples same disease briefing · shares chip-seq, small, lung
- GSE307955 ChIP-seq of PAX5 in H526 small cell lung cancer cell 4 samples same disease briefing · shares chip-seq, small, lung
- GSE318538 Effect of KIFC1 knockdown on gene expression in H146 small-cell lung cancer cells 6 samples same disease briefing · shares knockdown, small, lung
- GSE230649 MYC family amplification dictates sensitivity to BET bromodomain protein inhibitor Mivebresib (ABBV-075) in small cell lung cancer 28 samples same disease briefing · shares small, lung
- GSE296258 Loss of the USP22 deubiquitylase confers resistance to chemotherapy in small cell lung cancer [CUT&Tag] 23 samples same disease briefing · shares small, lung
- GSE312626 An ASCL1 C-Terminal Phospho-Degron Control ASCL1 Protein Stability in Small Cell Lung Cancer 9 samples same disease briefing · shares small, lung
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.