snATAC-seq from Panc1 (ENCSR974TUB)
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 1 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- An integrated encyclopedia of DNA elements in the human genomeNature · 2012
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE341062_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA63443 and SRA study SRP000592. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE319526 Effect of HIF-1alpha and HIF-2alpha on hypoxic response in Panc1 cells 36 samples shares panc1
- GSE320200 Effect of ARNT on hypoxic response in Panc1 cells 27 samples shares panc1
- GSE43738 Expression data from inflamed PANC1 cells 7 samples shares panc1
- GSE279527 Differential Gene Expression in oxaliplatin-resistant versus unteated PANC1 cells 6 samples shares panc1
- GSE220895 Effect of DHODH inhibitor on gene expression in Panc1 cells 6 samples shares panc1
- GSE273598 Single-cell multiome profiling reveals pancreas cell type-specific gene regulatory programs of type 1 diabetes progression [snATAC-seq] 32 samples shares snatac-seq
- GSE338484 Somatic mutations reveal the ontogeny of microglia in human aging [snATAC-seq] 29 samples shares snatac-seq
- GSE300786 Enhancer Dynamics and Spatial Organization Drive Anatomically Restricted Cellular States in the Human Spinal Cord [snATAC-seq] 20 samples shares snatac-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.