Comparison of expression microarray data and somatic mutation signature in primary HCC
Expression microarray · human · 7 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 7 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE36390_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA153277. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 7 more — browse all 7 samples with per-sample file links →
- GSE285625 Finding Sorafenib-Responding Signature in Hepatocellular Carcinoma (HCC) 33 samples shares hcc, signature
- GSE14520 Gene expression data of human hepatocellular carcinoma (HCC) 488 samples shares hcc
- GSE320155 scRNA‑seq of human intra‑hepatic CD4⁺ T cells reveals unique Treg transcriptional identities and two steady‑state tissue‑adaptation programs across healthy and HCC liver samples 60 samples shares hcc
- GSE251942 Hight througput RNA sequencing in a cohort of HBV related HCC and healty liver samples 25 samples shares hcc
- GSE13425 Expression data from ALL patients included in the set used to construct a classification signature (COALL cohort) 190 samples shares signature
- GSE76427 Microarray expression data for tumor and adjacent non-tumor tissues from hepatocellular carcinoma patients 167 samples shares microarray
- GSE282701 scRNAseq profile of hepatocellular carcinoma (HCC) tumors and adjacent tissues with or without hepatitis-B virus (HBV) infection 12 samples shares hcc
- GSE49710 RNA-Seq reveals an unprecedented complexity of the neuroblastoma transcriptome and is suitable for clinical endpoint prediction [microarray] 498 samples shares microarray
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.