RNA-Seq reveals an unprecedented complexity of the neuroblastoma transcriptome and is suitable for clinical endpoint prediction [microarray]
Expression microarray · human · 498 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- NeuroblastomaThis series is part of our curated briefing on it.
- Samples
- 498 samples: 400 × SEQC NB patientGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE49710_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA214798. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 400 samples.
How we read this: 1 replicated groups read from the first 400 of 498 sample titles; they account for 400 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1205238 SEQC NB patient 001 SEQC NB patient
- GSM1205239 SEQC NB patient 002 SEQC NB patient
- GSM1205240 SEQC NB patient 003 SEQC NB patient
- GSM1205241 SEQC NB patient 004 SEQC NB patient
- GSM1205242 SEQC NB patient 005 SEQC NB patient
- GSM1205243 SEQC NB patient 006 SEQC NB patient
- GSM1205244 SEQC NB patient 007 SEQC NB patient
- GSM1205245 SEQC NB patient 008 SEQC NB patient
- GSM1205246 SEQC NB patient 009 SEQC NB patient
- GSM1205247 SEQC NB patient 010 SEQC NB patient
- GSM1205248 SEQC NB patient 011 SEQC NB patient
- GSM1205249 SEQC NB patient 012 SEQC NB patient
- GSM1205250 SEQC NB patient 013 SEQC NB patient
- GSM1205251 SEQC NB patient 014 SEQC NB patient
- GSM1205252 SEQC NB patient 015 SEQC NB patient
- GSM1205253 SEQC NB patient 016 SEQC NB patient
- GSM1205254 SEQC NB patient 017 SEQC NB patient
- GSM1205255 SEQC NB patient 018 SEQC NB patient
- GSM1205256 SEQC NB patient 019 SEQC NB patient
- GSM1205257 SEQC NB patient 020 SEQC NB patient
- GSM1205258 SEQC NB patient 021 SEQC NB patient
- GSM1205259 SEQC NB patient 022 SEQC NB patient
- GSM1205260 SEQC NB patient 023 SEQC NB patient
- GSM1205261 SEQC NB patient 024 SEQC NB patient
- GSM1205262 SEQC NB patient 025 SEQC NB patient
- GSM1205263 SEQC NB patient 026 SEQC NB patient
- GSM1205264 SEQC NB patient 027 SEQC NB patient
- GSM1205265 SEQC NB patient 028 SEQC NB patient
- GSM1205266 SEQC NB patient 029 SEQC NB patient
- GSM1205267 SEQC NB patient 030 SEQC NB patient
- GSM1205268 SEQC NB patient 031 SEQC NB patient
- GSM1205269 SEQC NB patient 032 SEQC NB patient
- GSM1205270 SEQC NB patient 033 SEQC NB patient
- GSM1205271 SEQC NB patient 034 SEQC NB patient
- GSM1205272 SEQC NB patient 035 SEQC NB patient
- GSM1205273 SEQC NB patient 036 SEQC NB patient
- GSM1205274 SEQC NB patient 037 SEQC NB patient
- GSM1205275 SEQC NB patient 038 SEQC NB patient
- GSM1205276 SEQC NB patient 039 SEQC NB patient
- GSM1205277 SEQC NB patient 040 SEQC NB patient
+ 458 more — browse all 498 samples with per-sample file links →
- GSE120572 A mechanistic classification of clinical phenotypes in neuroblastoma 394 samples same disease briefing · shares neuroblastoma, clinical
- GSE16476 Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma 88 samples same disease briefing · shares neuroblastoma
- GSE112914 Differential gene expression analysis of MYCN-amplified neuroblastoma cells after Doxycycline inducible shRNA knockdown of JMJD6 gene expression 44 samples same disease briefing · shares neuroblastoma
- GSE143713 Genome methylation defines EZH2 inhibitor resistance in neuroblastoma [I] 24 samples same disease briefing · shares neuroblastoma
- GSE181582 IGF2BP1 induces neuroblastoma via a druggable feedforward loop with MYCN promoting 17q oncogene expression 264 samples same disease briefing · shares neuroblastoma
- GSE12494 SNP data from Neuroblastoma samples 262 samples same disease briefing · shares neuroblastoma
- GSE164456 Histone lysine demethylase 4 family proteins maintain the transcriptional program and adrenergic cellular state of MYCN-amplified neuroblastoma 69 samples same disease briefing · shares neuroblastoma
- GSE130612 Multi-omics analysis of neuroblastoma cells reveals a diversity of malignant transformations 64 samples same disease briefing · shares neuroblastoma
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.