Ly6Chi monocytes in the inflamed colon give rise to pro-inflammatory effector cells and migratory antigen presenting cells.
Expression microarray · mouse · 8 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 8 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE42101_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA179136. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 8 more — browse all 8 samples with per-sample file links →
- GSE27859 Inflammation switches the differentiation program of Ly6Chi monocytes from anti-inflammatory macrophages to inflammatory dendritic cells in the colon 10 samples shares ly6chi, monocytes
- GSE281286 Identification of antigen-presenting cell-T cell interactions driving immune responses to food 787 samples shares presenting, antigen
- GSE228457 IL-7 mediated immunoregulatory feedback loop promotes dampening of immune effector functions by hypoinflammatory monocytes. 305 samples shares monocytes, effector
- GSE103618 Direct reprogramming of fibroblasts into antigen-presenting dendritic cells 221 samples shares presenting, antigen
- GSE267506 Ezrin drives adaptation of monocytes to the inflamed lung microenvironment 18 samples shares monocytes, inflamed
- GSE325044 Olfr2-positive macrophages originating from monocytes proliferate in situ and present a pro-inflammatory foamy-like phenotype 15 samples shares pro-inflammatory, monocytes
- GSE317486 Identification of CD74-positive antigen presenting glioma cells in primary human tumors and murine models of NF1 high-grade glioma 10 samples shares presenting, antigen
- GSE302362 Induction of antigen-presenting monocyte-derived dendritic cells by nanoparticles inhibits metastasis and relieves immunosuppression in the metastatic niche 6 samples shares presenting, antigen
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.