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Ribosome Profiling over a Zebrafish Developmental Timecourse

GSE46512 Danio rerio Non-coding RNA profiling by high throughput sequencing 8 samples Submitted 2013/05/23 Platform GPL14875
Summary
To experimentally-validate the non-coding status of annotated lncRNAs, we performed ribosome profiling over a developmental timecourse that matched our previously-published (Pauli et al. 2012) developmental transcriptome. We find that many previously-annotated lncRNAs appear to be translated, but in a pattern more akin to 5' leaders of coding genes.
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Also filed as BioProject PRJNA200706 and SRA study SRP021915. Searching any of these in the dataset finder brings you back here.

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