A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium
RNA-seq (gene expression) · synthetic construct; Homo sapiens · 3396 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- synthetic construct; Homo sapiens
- Samples
- 3396 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE47774_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA208369 and SRA study SRP025982. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3396 more — browse all 3396 samples with per-sample file links →
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
- GSE300453 Sequence-specific RNA recognition drives Restrictor-mediated termination of extragenic transcription 163 samples
- GSE283210 MicroRNA-directed control of complex mRNA stability patterns across cell types 98 samples
- GSE293001 Spatial transcriptomics signatures in COPD 917 samples
- GSE304327 Transcriptomic analysis of BPA alternative chemicals in primary human mammary epithelial cells 666 samples
- GSE249247 Integrated multi-omics analysis of zinc finger proteins uncovers roles in RNA regulation. 630 samples
- GSE224204 Functional investigation of inherited noncoding genetic variation impacting the pharmacogenomics of childhood acute lymphoblastic leukemia treatment 117 samples
- GSE302375 Splicing fidelity infuences the fate of mRNA molecules 101 samples
- GSE303138 HNRNPH controls alternative splicing cooperatively on a transcriptome-wide scale 63 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.