Single cell Hi-C reveals cell-to-cell variability in chromosome structure
Single-cell RNA-seq · mouse · 11 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 11 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE48262_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA209421 and SRA study SRP026294. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 11 more — browse all 11 samples with per-sample file links →
- GSE254723 Extensive folding variability between homologous chromosomes in mammalian cells 2239 samples shares variability, chromosome
- GSE307191 Base pair resolution chromosome conformation capture reveals mechanistic insights into the nature of chromatin structure [ChIP-seq] 20 samples shares chromosome, structure
- GSE279796 Setdb1 regulates proper differentiation of adult intestinal stem cells via restraining permissive chromatin structure and transcriptional variability 18 samples shares variability, structure
- GSE283966 B cell stimulation changes the structure and higher-order organization of the inactive X chromosome 15 samples shares chromosome, structure
- GSE281416 Base pair resolution chromosome conformation capture reveals mechanistic insights into the nature of chromatin structure [TT-Seq] 14 samples shares chromosome, structure
- GSE281414 Base pair resolution chromosome conformation capture reveals mechanistic insights into the nature of chromatin structure [ATAC-Seq] 12 samples shares chromosome, structure
- GSE288455 Unraveling the cohesin-chromatin interface: identifying protein interactions that modulate chromosome structure and function [ChIP-Seq] 22 samples shares chromosome, structure
- GSE255858 O-GlcNAcylation of CTCF regulates 3D chromatin structure [HiC] 6 samples shares structure
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.