Expression data from quiescent and activated neural stem cells from the adult mouse V-SVZ niche
Expression microarray · mouse · 6 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 6 samples: 3 × adult V-SVZ aNSCs, vs 2 × adult V-SVZ qNSCs,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE54653_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA237290. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 5 samples.
How we read this: 2 replicated groups read from 6 sample titles; they account for 5 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1321374 adult V-SVZ qNSCs biological replicate 1
- GSM1321375 adult V-SVZ qNSCs, biological replicate 2 adult V-SVZ qNSCs,
- GSM1321376 adult V-SVZ qNSCs, biological replicate 3 adult V-SVZ qNSCs,
- GSM1321377 adult V-SVZ aNSCs, biological replicate 1 adult V-SVZ aNSCs,
- GSM1321378 adult V-SVZ aNSCs, biological replicate 2 adult V-SVZ aNSCs,
- GSM1321379 adult V-SVZ aNSCs, biological replicate 3 adult V-SVZ aNSCs,
- GSE10806 Pluripotent stem cells induced from adult neural stem cells by reprogramming with two factors 11 samples shares neural, adult, stem
- GSE232833 Molecular Cascade Reveals Sequential Milestones Underlying Hippocampal Neural Stem Cell Development into an Adult State 189 samples shares neural, adult, stem
- GSE250278 Epigenetic maintenance of neural stem cell quiescence in the adult mouse hippocampus via Setd1a 51 samples shares neural, adult, stem
- GSE339586 Extensive Crosstalk between BMP and Notch Signaling Pathways in Activated Adult Muscle Stem Cells [RNA-seq III] 24 samples shares activated, adult, stem
- GSE274111 Effect of the depletion of YAP1 in adult spinal cord neural stem cells 20 samples shares neural, adult, stem
- GSE305745 Extensive Crosstalk between BMP and Notch Signaling Pathways in Activated Adult Muscle Stem Cells [CUT&Tag] 14 samples shares activated, adult, stem
- GSE285231 Systems genetics reveals the influence of eQTLs in mouse embryonic stem cells on transcriptional variation later in differentiated neural progenitor cells 186 samples shares neural, stem
- GSE280783 Effects of loss and gain of KAT6B on gene expression in neural stem and progenitor cells [NSC_Kat6b_RNAseq] 15 samples shares neural, stem
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.