Transcriptomics and methylomics of human monocytes [methylome]
DNA methylation · human · 1202 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 1202 samples: 1202 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE56046_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA242318. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from the first 400 of 1202 sample titles: 400 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1353204 100001_peripheral_CD14 [methylation]
- GSM1353205 100002_peripheral_CD14 [methylation]
- GSM1353206 100003_peripheral_CD14 [methylation]
- GSM1353207 100004_peripheral_CD14 [methylation]
- GSM1353208 100005_peripheral_CD14 [methylation]
- GSM1353209 100006_peripheral_CD14 [methylation]
- GSM1353210 100007_peripheral_CD14 [methylation]
- GSM1353211 100008_peripheral_CD14 [methylation]
- GSM1353212 100009_peripheral_CD14 [methylation]
- GSM1353213 100010_peripheral_CD14 [methylation]
- GSM1353214 100011_peripheral_CD14 [methylation]
- GSM1353215 100012_peripheral_CD14 [methylation]
- GSM1353216 100013_peripheral_CD14 [methylation]
- GSM1353217 100014_peripheral_CD14 [methylation]
- GSM1353218 100015_peripheral_CD14 [methylation]
- GSM1353219 100016_peripheral_CD14 [methylation]
- GSM1353220 100017_peripheral_CD14 [methylation]
- GSM1353221 100018_peripheral_CD14 [methylation]
- GSM1353222 100019_peripheral_CD14 [methylation]
- GSM1353223 100021_peripheral_CD14 [methylation]
- GSM1353224 100022_peripheral_CD14 [methylation]
- GSM1353225 100023_peripheral_CD14 [methylation]
- GSM1353226 100024_peripheral_CD14 [methylation]
- GSM1353227 100025_peripheral_CD14 [methylation]
- GSM1353228 100026_peripheral_CD14 [methylation]
- GSM1353229 100027_peripheral_CD14 [methylation]
- GSM1353230 100028_peripheral_CD14 [methylation]
- GSM1353231 100029_peripheral_CD14 [methylation]
- GSM1353232 100030_peripheral_CD14 [methylation]
- GSM1353233 100031_peripheral_CD14 [methylation]
- GSM1353234 100032_peripheral_CD14 [methylation]
- GSM1353235 100033_peripheral_CD14 [methylation]
- GSM1353236 100035_peripheral_CD14 [methylation]
- GSM1353237 100036_peripheral_CD14 [methylation]
- GSM1353238 100037_peripheral_CD14 [methylation]
- GSM1353239 100038_peripheral_CD14 [methylation]
- GSM1353240 100039_peripheral_CD14 [methylation]
- GSM1353241 100040_peripheral_CD14 [methylation]
- GSM1353242 100041_peripheral_CD14 [methylation]
- GSM1353243 100042_peripheral_CD14 [methylation]
+ 1162 more — browse all 1202 samples with per-sample file links →
- GSE56581 Transcriptomics and methylomics of human T cells [methylome] 214 samples shares methylomics, methylome
- GSE56047 Transcriptomics and methylomics of human monocytes 2832 samples shares methylomics, monocytes
- GSE241900 Quartet Methylomics 117 samples shares methylomics
- GSE49277 Genome-scale methylome profiling of adrenocortical carcinomas (ACC) and adenomas (ACA) 81 samples shares methylome
- GSE149250 Pancreatic Ductal Adenocarcinoma methylome analysis identifies differentially methylated genes in the Calcium signaling pathway and early methylation alterations. 15 samples shares methylome
- GSE205672 Transcriptomes of human PBMCs and monocytes in sepsis patients 460 samples shares monocytes
- GSE63818 The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells 364 samples shares methylome
- GSE253661 Longitudinal single-cell transcriptomics of monocytes, Tfh and gd Tcells following a control human malaria infection. 16 samples shares monocytes
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.