Identification of IL-23 target genes in intestinal CD4+ T cells
Expression microarray · mouse · 11 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 11 samples: 6 × WT T cells vs 5 × Il23r-/- T cellsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE58147_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA251386. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 11 samples.
How we read this: 2 replicated groups read from 11 sample titles; they account for 11 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1402443 WT T cells rep1 WT T cells
- GSM1402444 WT T cells rep2 WT T cells
- GSM1402445 WT T cells rep3 WT T cells
- GSM1402446 WT T cells rep4 WT T cells
- GSM1402447 WT T cells rep5 WT T cells
- GSM1402448 WT T cells rep6 WT T cells
- GSM1402449 Il23r-/- T cells rep1 Il23r-/- T cells
- GSM1402450 Il23r-/- T cells rep2 Il23r-/- T cells
- GSM1402451 Il23r-/- T cells rep3 Il23r-/- T cells
- GSM1402452 Il23r-/- T cells rep4 Il23r-/- T cells
- GSM1402453 Il23r-/- T cells rep5 Il23r-/- T cells
- GSE278003 Single cell RNA sequencing of CD45+ immune cells from tumor and tumor-adjacent mammary adipose tissue in a postmenopausal breast cancer model of lean, obese, and weight loss Trem2+/+ and Trem2-/- mice 92 samples shares cd4
- GSE325195 Dendritic cell redundancy enables priming of anti-tumor CD4 T cells in pancreatic cancer 30 samples shares cd4
- GSE325329 Transcriptomic profiling of macrophages that phagocytosed apoptotic Treg or conventional CD4⁺ T (Tconv) cells under different polarization conditions [RNA-Seq] 28 samples shares cd4
- GSE199288 Perivascular fibrosis is mediated by a KLF10-IL-9 signaling axis in CD4+ T cells 27 samples shares cd4
- GSE303349 CXCL16-driven CD4+ T cells orchestrate immunosurveillance against MHC-I-deficient tumors 24 samples shares cd4
- GSE297921 Single-cell sequencing of CD45+ cells isolated from nasal mucosa of mice 18 samples shares cd4
- GSE302620 Oncolytic virus therapy mobilizes tumor-resident CD4+ bystander T cells to restore systemic anti-microbial immunity [ATAC-seq] 16 samples shares cd4
- GSE324687 Eomes sustains progenitor CD4⁺ T helper cells to promote anti-tumor immunity during immunotherapy [scRNA] 16 samples shares cd4
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.