A paracrine IGF1/IGF1R-PI3K signaling loop underlies resistance to CSF-1R inhibition in GBM
RNA-seq (gene expression) · mouse · 32 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE69104_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA284594. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 32 more — browse all 32 samples with per-sample file links →
- GSE325555 Inhibition of IGF1R in Early MMTV-Wnt1 Mammary Tumors: A Transcriptomic Analysis 8 samples shares igf1, inhibition
- GSE37475 CSF-1R inhibition alters macrophage polarization and blocks gliomagenesis 16 samples shares csf-1r, inhibition
- GSE319792 CSF-1R inhibition and lenalidomide synergize to promote myeloma control after autologous stem cell transplantation 8 samples shares csf-1r, inhibition
- GSE283799 Kupffer cells control neonatal hepatic glucose metabolism via Igf1 signaling 20 samples shares igf1
- GSE274184 Transcriptomic study on the effect of Igf1r deficiency in control and bleomycin-challenged mouse lungs. 12 samples shares igf1
- GSE285047 Kupffer cells control neonatal hepatic glucose metabolism via Igf1 signaling [3' scRNA-seq] 11 samples shares igf1
- GSE276419 Detect IGF1R function in postnatal bone marrow mesenchymal stem cell 11 samples shares igf1
- GSE229409 Gene expression profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors 10 samples shares csf-1r
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.