GEO series

MicroRNA profiles of 84 colon adenocarcinomas and paired nontumorous

GSE7828 Mus musculus (mouse) Non-coding RNA profiling 170 samples Submitted 2008/02/12 Platform GPL4700

At a glance

Non-coding RNA profiling · mouse · 170 samples

What it is: Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
Organism: Mus musculus (mouse)
Samples: 170 samples
Data you can get: A processed expression table (series matrix) and the array files, from NCBI.

Summary (written by the submitters)

The goal of this study was to identify microRNAs that were differentially expressed in colon tumors and determine if microRNA expression profiles could predict poor cancer survival. Keywords: disease state design

This dataset

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Download · which file do I need?

Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

Series matrix ↓

2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need.

All supplementary files ↗

3 · The original raw files

Whole study · RAW.tar

Everything the authors deposited as one archive (GSE7828_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.

Whole study · RAW.tar ↓

Also filed as BioProject PRJNA100067. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 18230780) ↗

Samples in this study

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+ 170 more — browse all 170 samples with per-sample file links →

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