Transcriptional response to early life stress in male and female mouse brain
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 179 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 179 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE89692_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA352967 and SRA study SRP093288. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 179 more — browse all 179 samples with per-sample file links →
- GSE334540 Single nucleus multiome (RNAseq and ATACseq) of male and female mouse pituitary 32 samples shares female, male
- GSE308220 Circadian rhythms in microglia mediate early life synaptic development in a sex-specific manner. 75 samples shares early, life
- GSE296145 SPEN loss drives extra-follicular diffuse large B cell lymphoma with female-specific lethality and TLR pathway therapeutic vulnerabilities 36 samples shares female, male
- GSE266417 Female Mice with an Xist Deletion in B Cells Can Develop Lupus-Associated Phenotypes 28 samples shares female, male
- GSE249077 Mapping the female mouse chromatin accessibility landscape by UUATAC-seq 23 samples shares female, male
- GSE241318 Asynchronous female reproductive organ ageing as revealed by single-cell transcriptomic atlas 21 samples shares female, male
- GSE214191 Oxidative Stress Converts Benign Lesions to Cancer via a Self-Amplifying NRF2-EZH2 Loop 63 samples shares stress
- GSE293881 Single cell 10X Genomics Multiome Analysis of H3.3K4M Mutant Brain Samples 32 samples shares brain
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.