Gene expression and 4sUDRB-seq for NF90/NF110 of human scramble and KD HeLa cells.
RNA-seq (gene expression) · human · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 18 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE90874_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA356263 and SRA study SRP094563. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 18 more — browse all 18 samples with per-sample file links →
- GSE306607 RNA sequencing of HeLa cells with scramble control and CNOT11 knockdown 4 samples shares scramble, hela
- GSE73325 4sUDRB-seq of human PA1 cells, undifferentiated H9 cells and H9 differentiated FB neurons 50 samples shares 4sudrb-seq
- GSE123456 Gene Level Expression Profiling in human tongue squamous carcinoma cell line (SAS): gene expression profile in SAS cells transfected with scrambled control or C6orf141 mimic 4 samples shares scramble
- GSE242063 Effect on gene expression of knock down of Scrambled control or Kdm3b on wild-type or Idh2 R140Q TF-1 cells 9 samples shares scramble
- GSE173161 Comparative analysis of gene expression after Oct4 or Scrambled siRNA knockdown in HNSCC cell lines 18 samples shares scramble
- GSE242061 Effect on chromatin accessibility of knock down of Scrambled control or Kdm3b on wild-type or Idh2 R140Q TF-1 cells 9 samples shares scramble
- GSE290017 Transcriptome profiling of human bladder cancer cell line RT112 infected with lentivirus expressing either an shRNA targeting ELOVL6 (shE6) or a scrambled shRNA (shCtrl) 9 samples shares scramble
- GSE282563 RNAseq data from expanded human Treg isolated from healthy blood donor and crispr for target candidate or scramble 7 samples shares scramble
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.