Transcriptome analysis of single cells from the mouse dentate gyrus [10X]
Single-cell RNA-seq · mouse · 5454 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 5454 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE95315_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA376609 and SRA study SRP100932. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 5454 more — browse all 5454 samples with per-sample file links →
- GSE95753 Transcriptome analysis of single cells from the mouse dentate gyrus 7989 samples shares dentate, gyrus
- GSE95752 Transcriptome analysis of single cells from the mouse dentate gyrus [C1] 2303 samples shares dentate, gyrus
- GSE104323 Transcriptome analysis of single cells from the developing mouse dentate gyrus 232 samples shares dentate, gyrus
- GSE205936 Single-Cell Analysis of Aging Mouse Dentate Gyrus 2 samples shares dentate, gyrus
- GSE156004 Functional heterogeneity of dentate gyrus mossy cells along the longitudinal axis of the hippocampus 10 samples shares dentate, gyrus
- GSE273494 Pattern separation memory requires Cerebellin 4-Neogenin 1 signaling at dentate gyrus synapses 36 samples shares dentate, gyrus
- GSE309750 Translational reprogramming of dentate gyrus peptidergic circuitry gates antidepressant efficacy 34 samples shares dentate, gyrus
- GSE202481 Septo-dentate gyrus cholinergic circuits modulate function and morphogenesis of adult neural stem cells through granule cells in mice 1 samples shares dentate, gyrus
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.