Identifying targets of Klf2, Klf4, Klf5 and p53 in mouse embryonic stem cells
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 33 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 33 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE9535_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA103345. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 33 more — browse all 33 samples with per-sample file links →
- GSE51877 Identifying an Apical Ectodermal Ridge (AER) signature in embryonic day 11.5 mouse forelimb. 7 samples shares identifying, embryonic
- GSE183152 Identifying a perivascular niche supporting lung alveoli epithelial stem cells and metastatic cancer cells 17 samples shares identifying, stem
- GSE315637 Immunopeptidome profiling in pulmonary fibrosis provides a new platform for identifying therapeutic targets 16 samples shares identifying, targets
- GSE287980 Identifying Putative Targets of Capn15 in Neurodevelopment 14 samples shares identifying, targets
- GSE300332 Identifying the role of DNMT1 in gene expression regulation in somatostatinergic interneurons during embryonic corticogenesis 6 samples shares identifying, embryonic
- GSE202693 Identifying transcriptional targets of ONECUT3 by RNAseq 6 samples shares identifying, targets
- GSE202680 Identifying transcriptional targets of ONECUT3 by ChIP-seq 6 samples shares identifying, targets
- GSE276516 Identifying the role of DNMT1 in gene expression regulation in somatostatinergic interneurons during embryonic corticogenesis [RNA-Seq] 4 samples shares identifying, embryonic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.