Identifying Putative Targets of Capn15 in Neurodevelopment
RNA-seq (gene expression) · mouse · 14 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 14 samples: 14 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Identifying putative substrates of Calpain-15 in neurodevelopmentPloS one · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE287980_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1215400 and SRA study SRP559741. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 14 sample titles: 14 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8756694 WT_1 RNA-seq of mouse brain
- GSM8756695 WT_2 RNA-seq of mouse brain
- GSM8756696 WT_3 RNA-seq of mouse brain
- GSM8756697 WT_4 RNA-seq of mouse brain
- GSM8756698 WT_5 RNA-seq of mouse brain
- GSM8756699 WT_6 RNA-seq of mouse brain
- GSM8756700 WT_7 RNA-seq of mouse brain
- GSM8756701 KO_1 RNA-seq of mouse brain
- GSM8756702 KO_2 RNA-seq of mouse brain
- GSM8756703 KO_3 RNA-seq of mouse brain
- GSM8756704 KO_4 RNA-seq of mouse brain
- GSM8756705 KO_5 RNA-seq of mouse brain
- GSM8756706 KO_6 RNA-seq of mouse brain
- GSM8756707 KO_7 RNA-seq of mouse brain
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.