Single cell gene expression in Dlxi1/2b::eGFP+ cells before and after migration, 4 weeks
Single-cell RNA-seq · human · 181 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 181 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE95837_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA378545 and SRA study SRP101582. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 181 more — browse all 181 samples with per-sample file links →
- GSE93321 Single cell gene expression in Dlxi1/2b::eGFP+ cells before and after migration, 2 weeks 229 samples shares dlxi1, migration, weeks, egfp
- GSE96045 Single cell gene expression in Dlxi1/2b::eGFP+ cells before and after migration 410 samples shares dlxi1, migration, egfp
- GSE202344 Gene expression in 15 weeks of neurons differentiated from MPS II-induced pluripotent stem cells 12 samples shares weeks
- GSE214970 Amino acids fuel FLS activation and arthritis by regulating chemokine expression and leukocyte migration 95 samples shares migration
- GSE278089 THUMPD3 regulates alternative splicing of ECM transcripts in human lung cancer cells and promotes proliferation and migration 23 samples shares migration
- GSE298282 Endothelins influence the proliferation-migration balance of IDH1-mutant glioma cells and promote proneural to mesenchymal transition 14 samples shares migration
- GSE298356 Endothelins positively influences the proliferation vs migration balance of IDH1-mutant glioma cells and promotes proneural to mesenchymal transition [RNAseq-275HUVEC] 12 samples shares migration
- GSE287572 Transcriptome analysis of triple-negative breast cancer cells HCC1937 and MDA-MB-231 treated with Kalanchoe pinnata (Bryophyllum pinnata) reveals regulation of migration and invasion by downregulation of genes JAK2, ROCK1, ROCK2 and PIK3CA. 12 samples shares migration
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.