RNA_seq and Ribo_seq analyses of control and CPT-treated MCF7 cells
RNA-seq (gene expression) · human · 8 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 8 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE96643_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA379292 and SRA study SRP101952. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 8 more — browse all 8 samples with per-sample file links →
- GSE310281 Translational control by RPL22L1-specific ribosomes enhances DNA repair and chemoresistance 12 samples shares control, ribo
- GSE307843 Transcriptomic profiling in MCF7 parent and RB1 knockout cells following treatment with abemaciclib 12 samples shares mcf7
- GSE267064 Effect of miR-662 and miR-24-2-5p overexpressions on gene expression in human MDA-MB-231-luc2-NW1 (NW1) and MCF7 cell lines. 15 samples shares mcf7
- GSE339254 Single cell sequencing of APECED patient and Healthy control peripheral blood cells 74 samples shares control
- GSE253661 Longitudinal single-cell transcriptomics of monocytes, Tfh and gd Tcells following a control human malaria infection. 16 samples shares control
- GSE251919 Mutant NPM1 marginally impacts ribosome footprint in acute myeloid leukemia cells 12 samples shares ribo
- GSE297547 Single-cell RNA sequencing of PBMCs from patients with myasthenia gravis and healthy controls 25 samples shares control
- GSE282509 Human eIF2A has a minimal role in translation initiation and in uORFmediated translational control 20 samples shares control
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.