RNAseq analysis between hepatocytes isolated from control livers, β1-integrin mutant livers, P21 over-expressed livers and ductal cells.
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE98034_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA383745 and SRA study SRP104505. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE254789 Single cell RNA sequencing of dorsal root ganglia (DRG) in Cdx2-Cre; Piezo2 conditional mutants and control littermates, age P21-P24 6 samples shares p21, control, mutant
- GSE309637 Effects of TCDD on gene expression in hepatocytes isolated from WT and PkmΔDRE mice. 144 samples shares hepatocytes, isolated
- GSE240047 A Metabolic Switch Controlling Liver Cancer Evolution from Senescent NASH Hepatocytes 30 samples shares hepatocytes, control
- GSE280462 Effect of Sirt2 deletion in mouse hepatocytes on gene experession in mouse livers overexpressed with GFP or MET/CAT 12 samples shares hepatocytes, livers
- GSE200658 The nuclear receptors ERRα and PPARα co-ordinately control starvation-induced gene expression in hepatocytes. 12 samples shares hepatocytes, control
- GSE284186 Gene expression profile at single cell level of hepatocytes and non parenchymal cells (NPCs) isolated from a murine model of MASLD 8 samples shares hepatocytes, isolated
- GSE266447 A Metabolic Switch Controlling Liver Cancer Evolution from Senescent NASH Hepatocytes 6 samples shares hepatocytes, control
- GSE222338 Single cell RNAseq of hepatocytes isolated from UBC-injected mice at different timepoints post-HDTV 4 samples shares hepatocytes, isolated
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.