Genes up-regulated by VE-cadherin expression and clustering at junctions
Expression microarray · mouse · 16 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples: 8 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE11674_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA106073. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 8 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM296617 VEC_Null_sparse_rep1 VEC_Null_sparse
- GSM296618 VEC_Null_sparse_rep2 VEC_Null_sparse
- GSM296619 VEC_Null_confluent_rep1 VEC_Null_confluent
- GSM296620 VEC_Null_confluent_rep2 VEC_Null_confluent
- GSM296621 VEC_positive_sparse_rep1 VEC_positive_sparse
- GSM296622 VEC_positive_sparse_rep2 VEC_positive_sparse
- GSM296623 VEC_positive_confluent_rep1 VEC_positive_confluent
- GSM296624 VEC_positive_confluent_rep2 VEC_positive_confluent
- GSM296625 VEC_Null_sparse_ChipB_rep1 VEC_Null_sparse_ChipB
- GSM296626 VEC_Null_sparse_ChipB_rep2 VEC_Null_sparse_ChipB
- GSM296627 VEC_Null_confluent_ChipB_rep1 VEC_Null_confluent_ChipB
- GSM296628 VEC_Null_confluent_ChipB_rep2 VEC_Null_confluent_ChipB
- GSM296629 VEC_positive_sparse_ChipB_rep1 VEC_positive_sparse_Chi…
- GSM296631 VEC_positive_sparse_ChipB_rep2 VEC_positive_sparse_Chi…
- GSM296632 VEC_positive_confluent_ChipB_rep1 VEC_positive_confluent_…
- GSM296633 VEC_positive_confluent_ChipB_rep2 VEC_positive_confluent_…
- GSE315987 M-cadherin regulates the formation of adherens junctions and secondary myofibers during fetal myogenesis to determine adult myofiber number and muscle mass 88 samples shares junctions
- GSE318279 Self-clustering of three CBX2 molecules drives PRC2 to promote facultative heterochromatinization of Polycomb target genes 33 samples shares clustering
- GSE271982 Histone acetylation-dependent clustering of BRD2 instructs transcription dynamics 168 samples shares clustering
- GSE208388 Epigenetically-controlled tumor antigens derived from splice junctions between exons and transposable elements [RNA-seq] 105 samples shares junctions
- GSE319068 FGF signalling orchestrates cell-cell junctions and cell fate decisions in salivary gland branching morphogenesis 12 samples shares junctions
- GSE318276 Self-clustering of three CBX2 molecules drives PRC2 to promote facultative heterochromatinization of Polycomb target genes [Cut & Run, Cut & Tag] 9 samples shares clustering
- GSE270758 Disease-associated microglia signature genes are up-regulated during photoreceptor degeneration 8 samples shares up-regulated
- GSE255172 Plakophilin 4 controls the spatio-temporal activity of RhoA at adherens junctions to promote cortical actin ring formation and tissue tension 36 samples shares junctions
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.