The Human Milk Oligosaccharide 3'Sialyllactose Promotes Selective Modulation of Inflammation and Reduces Atherosclerosis Development in Mice
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 55 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 55 samples: 53 distinct titles, 2 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE168730_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA713785 and SRA study SRP310264. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 55 sample titles: 53 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5160125 Srebp ChIP-seq GW3965 rep1
- GSM5160126 LXR ChIP-seq GW3965 rep1
- GSM5160127 LXR ChIP-seq GW3965 rep2
- GSM5160128 Srebp ChIP-seq Input GW3965 rep1
- GSM5160129 LXR ChIP-seq Input GW3965 rep1
- GSM5160130 LXR ChIP-seq Input GW3965 rep2
- GSM5160131 p300 ChIP-seq GW3965 rep1
- GSM5160132 p300 ChIP-seq PBS rep1
- GSM5160133 p300 ChIP-seq LPS2h rep1
- GSM5160134 p300 ChIP-seq LPS6h rep1
- GSM5160135 p300 ChIP-seq 3'SL LPS2h rep1
- GSM5160136 p300 ChIP-seq 3'SL LPS6h rep1
- GSM5160137 p300 ChIP-seq 3'SL2h rep1
- GSM5160138 p300 ChIP-seq 3'SL6h rep1
- GSM5160139 p300 ChIP-seq PBS2 rep1
- GSM5160140 p300 ChIP-seq PBS6 rep1
- GSM5160141 p300 ChIP-seq Input rep1
- GSM5160142 H3K27Ac ChIP-seq PBS rep1
- GSM5160143 H3K27Ac ChIP-seq LPS2h rep1
- GSM5160144 H3K27Ac ChIP-seq LPS6h rep1
- GSM5160145 H3K27Ac ChIP-seq 3'SL LPS2h rep1
- GSM5160146 H3K27Ac ChIP-seq 3'SL LPS6h rep1
- GSM5160147 H3K27Ac ChIP-seq 3'SL2h rep1
- GSM5160148 H3K27Ac ChIP-seq 3'SL6h rep1
- GSM5160149 H3K27Ac ChIP-seq PBS2h rep1
- GSM5160150 H3K27Ac ChIP-seq PBS6h rep1
- GSM5160151 H3K27Ac ChIP-seq Input PBS rep1
- GSM5160152 H3K27Ac ChIP-seq Input 3SL LPS rep1
- GSM5160153 H3K27Ac_ChIP_PBS2_Rep2
- GSM5160154 H3K27Ac_ChIP_LPS2h_Rep2
- GSM5160155 H3K27Ac_ChIP_LPS6h_Rep2
- GSM5160156 H3K27Ac_ChIP_3SL2h_Rep2
- GSM5160157 H3K27Ac_ChIP_3SL6h_Rep2
- GSM5160158 H3K27Ac_ChIP_3SL_LPS2h_Rep2
- GSM5160159 H3K27Ac_ChIP_3SL_LPS6h_Rep2
- GSM5160160 C57_BMDM_ATAC_KLA_1h_rep1 [re-analyzed]
- GSM5160161 C57_BMDM_ATAC_KLA_1h_rep2 [re-analyzed]
- GSM5160162 C57_BMDM_ATAC_notx_rep1 [re-analyzed]
- GSM5160163 C57_BMDM_ATAC_notx_rep2 [re-analyzed]
- GSM5160164 p65 ChIP-seq WT noTx [re-analyzed]
+ 15 more — browse all 55 samples with per-sample file links →
- GSE167999 The Human Milk Oligosaccharide 3’Sialyllactose Promotes Inflammation Resolution and Reduces Atherosclerosis Development in Mice 12 samples shares oligosaccharide, atherosclerosis, sialyllactose, promotes, reduces, milk
- GSE288059 CFP1 promotes germinal center affinity maturation and restrains and memory B cell differentiation through H3K4me3 modulation 12 samples shares modulation, promotes
- GSE303699 Autoimmune Disease Risk Gene ANKRD55 Promotes Th17 Effector Function Through Metabolic Modulation [RNA-Seq] 60 samples shares modulation, promotes
- GSE312987 Effects of dietary human milk oligosaccharides (HMO) and Trichuiris muris (Tm) infection on the caecum transcriptome in mice 30 samples shares oligosaccharide, milk
- GSE210460 Time-Restricted Feeding Reduces Atherosclerosis in LDLR KO Mice but Not in ApoE Knockout Mice 24 samples shares atherosclerosis, reduces
- GSE243170 LTBR-mediated immunomodulation of the tumor microenvironment promotes anti-tumor responses 20 samples shares modulation, promotes
- GSE319030 Macrophage EHD1 promotes inflammation and stabilizes sortilin to accelerate atherosclerosis 14 samples shares atherosclerosis, promotes
- GSE333169 Transient CB2R Modulation Promotes Luminal-like Differentiation and Restricts Breast Cancer Plasticity 12 samples shares modulation, promotes
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.