Bulk RNA Sequencing of Wild Type and Cisplatin Induced AKI (3d and 7d groups) Mouse Kidney
RNA-seq (gene expression) · mouse · 9 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 9 samples: 9 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE179806_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA745150 and SRA study SRP327638. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 9 sample titles: 9 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5434501 NS_1: Sham Group rep1 bulkRNA-seq
- GSM5434502 NS_2: Sham Group rep2 bulkRNA-seq
- GSM5434503 NS_3: Sham Group rep3 bulkRNA-seq
- GSM5434504 Cis3d_1: Cis3d Group rep1 bulkRNA-seq
- GSM5434505 Cis3d_2: Cis3d Group rep2 bulkRNA-seq
- GSM5434506 Cis3d_3: Cis3d Group rep3 bulkRNA-seq
- GSM5434507 Cis7d_1: Cis7d Group rep1 bulkRNA-seq
- GSM5434508 Cis7d_2: Cis7d Group rep2 bulkRNA-seq
- GSM5434509 Cis7d_3: Cis7d Group rep3 bulkRNA-seq
- GSE220674 Bulk RNA Sequencing of Wild Type and Cisplatin Induced AKI (3d and 7d groups) Mice Kidneys 11 samples shares aki, cisplatin, induced, groups, kidney, bulk, wild, type
- GSE220691 Kidney Single-Cell Atlas Reveals Macrophage Heterogeneity in Progression and Regression of Cisplatin Induced AKI. 22 samples shares aki, cisplatin, induced, kidney
- GSE220675 Kidney Single-Cell Atlas Reveals Macrophage Heterogeneity in Progression and Regression of Cisplatin Induced AKI [scRNA-seq] 11 samples shares aki, cisplatin, induced, kidney
- GSE179812 Macrophage Heterogeneity in Progression and Regression Phases of Cisplatin Induced AKI Mice Model - A single-cell RNA sequencing study 17 samples shares aki, cisplatin, induced
- GSE310244 Dynamic Resilience: Stress Phenotypes and Their Impact on Opioid-Taking Behavior, Brain Activity, and Gene Expression 68 samples shares aki, type
- GSE239287 Single-cell transcriptome sequencing of macrophages in acute kidney injury(AKI) to chronic kidney dieases(CKD) 17 samples shares aki, kidney
- GSE307265 Experimentally induced myocardial infarction in mice - RNA Sequencing of kidneys 24 samples shares induced, kidney
- GSE274819 Single-cell RNA sequencing of murine kidneys for ischemia-reperfusion induced renal injury and fibrosis 10 samples shares induced, kidney
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.