Experimentally induced myocardial infarction in mice - RNA Sequencing of kidneys
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 9 × MI_5d vs 8 × sh vs 7 × MI_28dGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Systems biology approach uncovers candidates for kidney-heart interorgan crosstalk after myocardial infarctionScientific reports · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE307265_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1315044 and SRA study SRP617645. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 3 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9220189 sh_1 sh
- GSM9220190 sh_2 sh
- GSM9220191 sh_3 sh
- GSM9220192 sh_4 sh
- GSM9220193 sh_5 sh
- GSM9220194 sh_6 sh
- GSM9220195 sh_7 sh
- GSM9220196 sh_8 sh
- GSM9220197 MI_5d_1 MI_5d
- GSM9220198 MI_5d_2 MI_5d
- GSM9220199 MI_5d_3 MI_5d
- GSM9220200 MI_5d_4 MI_5d
- GSM9220201 MI_5d_5 MI_5d
- GSM9220202 MI_5d_6 MI_5d
- GSM9220203 MI_5d_7 MI_5d
- GSM9220204 MI_5d_8 MI_5d
- GSM9220205 MI_5d_9 MI_5d
- GSM9220206 MI_28d_1 MI_28d
- GSM9220207 MI_28d_2 MI_28d
- GSM9220208 MI_28d_3 MI_28d
- GSM9220209 MI_28d_4 MI_28d
- GSM9220210 MI_28d_5 MI_28d
- GSM9220211 MI_28d_6 MI_28d
- GSM9220212 MI_28d_7 MI_28d
- GSE307268 Experimentally induced myocardial infarction in mice - RNA Sequencing of sham left ventricular tissue and infarct zones 17 samples shares experimentally, myocardial, infarction, induced
- GSE220674 Bulk RNA Sequencing of Wild Type and Cisplatin Induced AKI (3d and 7d groups) Mice Kidneys 11 samples shares induced, kidneys
- GSE274819 Single-cell RNA sequencing of murine kidneys for ischemia-reperfusion induced renal injury and fibrosis 10 samples shares induced, kidneys
- GSE308914 Temporal Dynamics in Murine Cardiac Transcriptome following Myocardial Infarction 30 samples shares myocardial, infarction
- GSE210798 Splenic CD169+Tim4+ Marginal Zone Metallophilic Macrophages Are Essential for Wound Healing and Resolution of Inflammation After Myocardial Infarction 24 samples shares myocardial, infarction
- GSE267256 Bulk RNA-seq analysis reveals the crucial role of Collagen triplex helix repeat containing-1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction 17 samples shares myocardial, infarction
- GSE267388 mRNA expression profiles in hearts from sepsis-induced myocardial dysfunction mouse modles and controls 10 samples shares myocardial, induced
- GSE325608 Transcriptome Sequencing of BAPN-Induced Aortic Dissection in Male and Female Mice 48 samples shares induced
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.