DNA microarrays time course of a MaF pre-iPSC clone (C9) untreated or treated with Vc
Expression microarray · mouse · 8 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 8 samples: 4 × MaF pre-iPSC9P2, Vc-, D vs 4 × MaF pre-iPSC9P2, Vc+, DGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE19378_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA123905. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 8 samples.
How we read this: 2 replicated groups read from 8 sample titles; they account for 8 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM480935 MaF pre-iPSC9P2, Vc-, D3 MaF pre-iPSC9P2, Vc-, D
- GSM480936 MaF pre-iPSC9P2, Vc-, D4 MaF pre-iPSC9P2, Vc-, D
- GSM480937 MaF pre-iPSC9P2, Vc-, D5 MaF pre-iPSC9P2, Vc-, D
- GSM480938 MaF pre-iPSC9P2, Vc-, D6 MaF pre-iPSC9P2, Vc-, D
- GSM480939 MaF pre-iPSC9P2, Vc+, D3 MaF pre-iPSC9P2, Vc+, D
- GSM480940 MaF pre-iPSC9P2, Vc+, D4 MaF pre-iPSC9P2, Vc+, D
- GSM480941 MaF pre-iPSC9P2, Vc+, D5 MaF pre-iPSC9P2, Vc+, D
- GSM480942 MaF pre-iPSC9P2, Vc+, D6 MaF pre-iPSC9P2, Vc+, D
- GSE254121 Time-Course Analysis of Hepatic Single-Nuclei RNA-Sequencing in Mice Treated with 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) 42 samples shares treated, course, time
- GSE227320 Time course single-cell RNA-seq and single-cell ATAC-seq data from mESCs treated with retinoic acid 16 samples shares treated, course, time
- GSE161561 Transcriptome alteration in wild-type developing oligodendrocytes treated with interferon gamma and thapsigargin in comparison with untreated wild-type developing oligodendrocytes 40 samples shares untreated, treated
- GSE293533 Bulk RNA sequencing of bone marrow CD8+ T cells in BMF mice treated with or without baricitinib at different time points 16 samples shares treated, time
- GSE236765 RNA sequencing of LT-HSCs in the bone marrow from WT and Trim47-/- mice untreated or treated with 5-FU for 10 days 12 samples shares untreated, treated
- GSE288474 Gene expression profiles of genes extracted from the hearts of untreated FRDA mice (FA+FA), FRDA mice transplanted with total bone marrow (DP+FA), and WT mice transplanted with total bone marrow (DP+WT) 8 samples shares untreated, treated
- GSE21764 To determine the global gene expression response in murine LPS-induced macrophages treated with a bromodomain inhibitor. 24 samples shares treated
- GSE293709 Transcriptome analysis in the prefrontal cortex of different ASD mouse models treated with drug 1565 samples shares treated
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.