Tracheal aspirate bulk RNA sequencing from patients with ARDS [bulk RNA-seq]
RNA-seq (gene expression) · human · 46 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 46 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Acute Respiratory Distress Syndrome Molecular Phenotypes Have Distinct Lower Respiratory Tract TranscriptomesAmerican journal of respiratory and critical care medicine · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE200847_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA826911. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run TA203 … TA575 and carry no group information.
- GSM6045314 TA203
- GSM6045315 TA213
- GSM6045316 TA225
- GSM6045317 TA227
- GSM6045318 TA229
- GSM6045319 TA234
- GSM6045320 TA235
- GSM6045321 TA251
- GSM6045322 TA257
- GSM6045323 TA288
- GSM6045325 TA311
- GSM6045326 TA314
- GSM6045327 TA315
- GSM6045328 TA319
- GSM6045330 TA320
- GSM6045331 TA334
- GSM6045332 TA335
- GSM6045333 TA337
- GSM6045334 TA341
- GSM6045335 TA353
- GSM6045336 TA358
- GSM6045337 TA392
- GSM6045338 TA400
- GSM6045339 TA402
- GSM6045340 TA409
- GSM6045341 TA411
- GSM6045342 TA413
- GSM6045343 TA414
- GSM6045345 TA458
- GSM6045346 TA462
- GSM6045347 TA463
- GSM6045349 TA477
- GSM6045350 TA479
- GSM6045351 TA488
- GSM6045352 TA503
- GSM6045354 TA524
- GSM6045355 TA530
- GSM6045356 TA539
- GSM6045357 TA540
- GSM6045358 TA541
+ 6 more — browse all 46 samples with per-sample file links →
- GSE297742 Bulk RNA-seq of primary tumor biopsy samples from prostate adenocarcinoma patients 234 samples shares rna-seq, bulk
- GSE205154 Bulk RNA-Seq gene expression data for 289 primary and metastatic pancreatic ductal adenocarcinoma (PDAC) tumor samples from FFPE blocks. 289 samples shares rna-seq, bulk
- GSE327707 Sorted bulk RNA-seq profiling of human peripheral blood mononuclear cell populations across diverse in vitro immune stimuli 150 samples shares rna-seq, bulk
- GSE327166 Bulk RNA-seq profiling of pleural mesothelioma and comparator pleural specimens 89 samples shares rna-seq, bulk
- GSE309941 Immunometabolic Endotypes Define Distinct Clinical Trajectories in Type 2 Diabetes [bulk RNA-seq] 42 samples shares rna-seq, bulk
- GSE283079 Bulk RNA-seq of human knee osteoarthritis synovium 41 samples shares rna-seq, bulk
- GSE339456 Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [RNA-seq] 35 samples shares rna-seq, bulk
- GSE317207 Transcriptomic profiling of human hepatocellular carcinoma biopsy samples using bulk RNA-seq 33 samples shares rna-seq, bulk
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.