Bulk RNA-seq profiling of pleural mesothelioma and comparator pleural specimens
RNA-seq (gene expression) · human · 89 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 89 samples: 88 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Multiomic, Histologic, and scRNA-seq Profiling of Pleural Mesothelioma Reveals Negative Prognosis Associated With a Novel Uncommitted Molecular PhenotypeJournal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE327166_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1449561. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 89 sample titles: 88 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9650238 NSCLC-Adenocarcinoma, pleura, sample BULKRNA144255-1
- GSM9650239 Pleural Mesothelioma, tumor, sample BULKRNA190229-O
- GSM9650240 Pleural Mesothelioma, tumor, sample BULKRNA184761-O
- GSM9650241 Pleural Mesothelioma, tumor, sample BULKRNA196011-O
- GSM9650242 Pleural Mesothelioma, tumor, sample BULKRNA166590-O
- GSM9650243 Pleural Mesothelioma, tumor, sample BULKRNA189132-O
- GSM9650244 Pleural Mesothelioma, tumor, sample BULKRNA120271-O
- GSM9650245 Pleural Mesothelioma, tumor, sample BULKRNA194335-O
- GSM9650246 Pleural Mesothelioma, tumor, sample BULKRNA178133-O
- GSM9650247 Pleural Mesothelioma, tumor, sample BULKRNA106649-O
- GSM9650248 Pleural Mesothelioma, tumor, sample BULKRNA155528-O
- GSM9650249 Pleural Mesothelioma, tumor, sample BULKRNA175227-O
- GSM9650250 Pleural Mesothelioma, tumor, sample BULKRNA172444-O
- GSM9650251 Pleural Mesothelioma, tumor, sample BULKRNA107957-O
- GSM9650252 Pleural Mesothelioma, tumor, sample BULKRNA108535-O
- GSM9650253 Pleural Mesothelioma, tumor, sample BULKRNA108021-O
- GSM9650254 Pleural Mesothelioma, tumor, sample BULKRNA104538-O
- GSM9650255 Pleural Mesothelioma, tumor, sample BULKRNA100620-O
- GSM9650256 Pleural Mesothelioma, tumor, sample BULKRNA163323-O
- GSM9650257 Pleural Mesothelioma, tumor, sample BULKRNA141635-O
- GSM9650258 Pleural Mesothelioma, tumor, sample BULKRNA175512-O
- GSM9650259 Pleural Mesothelioma, tumor, sample BULKRNA118014-O
- GSM9650260 Pleural Mesothelioma, tumor, sample BULKRNA192918-O
- GSM9650261 Pleural Mesothelioma, tumor, sample BULKRNA151213-O
- GSM9650262 Pleural Mesothelioma, tumor, sample BULKRNA144197-O
- GSM9650263 Pleural Mesothelioma, tumor, sample BULKRNA189918-O
- GSM9650264 Pleural Mesothelioma, tumor, sample BULKRNA106064-O
- GSM9650265 Pleural Mesothelioma, tumor, sample BULKRNA189276-O
- GSM9650266 Pleural Mesothelioma, tumor, sample BULKRNA125117-O
- GSM9650267 Pleural Mesothelioma, tumor, sample BULKRNA153021-O
- GSM9650268 Pleural Mesothelioma, tumor, sample BULKRNA164161-O
- GSM9650269 Pleural Mesothelioma, tumor, sample BULKRNA194058-O
- GSM9650270 Pleural Mesothelioma, tumor, sample BULKRNA198160-O
- GSM9650271 Pleural Mesothelioma, tumor, sample BULKRNA172907-O
- GSM9650272 Pleural Mesothelioma, tumor, sample BULKRNA198382-O
- GSM9650273 Pleural Mesothelioma, tumor, sample BULKRNA184053-O
- GSM9650274 Pleural Mesothelioma, tumor, sample BULKRNA155007-O
- GSM9650275 Pleural Mesothelioma, tumor, sample BULKRNA186563-O
- GSM9650276 Pleural Mesothelioma, tumor, sample BULKRNA101941-O
- GSM9650277 Pleural Mesothelioma, tumor, sample BULKRNA174957-O
+ 49 more — browse all 89 samples with per-sample file links →
- GSE327167 Single-cell RNA-seq profiling of pleural mesothelioma and comparator pleural specimens 113 samples shares mesothelioma, comparator, specimens, rna-seq, pleural
- GSE327707 Sorted bulk RNA-seq profiling of human peripheral blood mononuclear cell populations across diverse in vitro immune stimuli 150 samples shares rna-seq, bulk
- GSE205154 Bulk RNA-Seq gene expression data for 289 primary and metastatic pancreatic ductal adenocarcinoma (PDAC) tumor samples from FFPE blocks. 289 samples shares rna-seq, bulk
- GSE317207 Transcriptomic profiling of human hepatocellular carcinoma biopsy samples using bulk RNA-seq 33 samples shares rna-seq, bulk
- GSE297742 Bulk RNA-seq of primary tumor biopsy samples from prostate adenocarcinoma patients 234 samples shares rna-seq, bulk
- GSE319969 Spatial and Bulk Transcriptomic Profiling Defines the Molecular Evolution of Cutaneous Squamous Cell Carcinoma and Reveals Stage-Specific Biomarkers of Clinical Relevance [RNA-Seq] 24 samples shares rna-seq, bulk
- GSE327386 RNA-Seq of paired diagnosis and relapse AML specimens with healthy controls 130 samples shares specimens, rna-seq
- GSE309941 Immunometabolic Endotypes Define Distinct Clinical Trajectories in Type 2 Diabetes [bulk RNA-seq] 42 samples shares rna-seq, bulk
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.