Genomic binding of NF-Y in mouse and human cells
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 27 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 27 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Genomic binding of NF-Y in mouse and human cellsGenomics · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE209627_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA861853 and SRA study SRP387839. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 27 more — browse all 27 samples with per-sample file links →
- GSE54745 Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells 18 samples shares binding
- GSE281611 Binding of MYC to nascent RNA suppresses innate immune signaling by R-loop-derived RNA-DNA hybrids [ChIP_Rx] 44 samples shares binding
- GSE252111 Mouse kidneys with ischemia-reperfusion injury; Human kidneys with acute kidney injury; RELA binding sites in primary human proximal tubular cells 31 samples shares binding
- GSE234078 A super-enhancer regulated RNA-binding protein cascade drives pancreatic cancer 24 samples shares binding
- GSE281781 MYC binding to nascent RNA suppresses innate immune signaling by R-loop-derived RNA-DNA hybrids 186 samples shares binding
- GSE312574 Unbalanced chromatin binding of Polycomb complexes drives neurodevelopmental disorders 179 samples shares binding
- GSE244770 Integrator complex enables NF- KB binding to induce innate immune response. 129 samples shares binding
- GSE251674 Redistribution of PU.1 partner transcription factor RUNX1 binding secures cell survival during leukemogenesis 79 samples shares binding
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.