Integrator complex enables NF- KB binding to induce innate immune response.
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 129 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 129 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE244770_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1024528 and SRA study SRP464787. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 129 more — browse all 129 samples with per-sample file links →
- GSE297764 STING activation induces cytotoxic and immune responses in meningiomas via inflammatory cell death pathways 20 samples shares nf, induce
- GSE317764 High-Fat Diet Causes Rapid Loss of Intestinal Group 3 Innate Lymphoid Cells Through Microbiota-Driven Inflammation 270 samples shares nf, innate
- GSE276386 Epithelial Cell Membrane Perforation Induces Allergic Airway Inflammation 99 samples shares nf, induce
- GSE295888 SIRT7 regulates NUCKS1 chromatin binding to elicit metabolic and inflammatory gene expression in senescence and liver aging. 30 samples shares nf, binding
- GSE209627 Genomic binding of NF-Y in mouse and human cells 27 samples shares nf, binding
- GSE263125 Macrophage-induced enteric neurodegeneration leads to motility impairment during gut inflammation 23 samples shares nf, induce
- GSE249872 Protective effect and mechanism of lipid perioxide in TNF-a induced apoptosis of intestinal epithelial cells in IBD. 22 samples shares nf, induce
- GSE264352 Enfortumab Vedotin Induces Immunogenic Cell Death and Shows Enhanced Preclinical Antitumor Activity When Combined With a PD-1 Inhibitor 21 samples shares nf, induce
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.