TAF2 and MYC
RNA-seq (gene expression) · human · 25 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 25 samples: 7 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- TATA-box binding protein-associated factor 2 (TAF2) in hepatocyte survival and tumorigenesisHepatology (Baltimore, Md.) · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE210486_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA865769 and SRA study SRP389476. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 25 samples.
How we read this: 7 replicated groups read from 25 sample titles; they account for 25 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6429257 C2 replicate 1 C2
- GSM6429258 C2 replicate 2 C2
- GSM6429259 C2 replicate 3 C2
- GSM6429260 T7 replicate 1 T7
- GSM6429261 T7 replicate 2 T7
- GSM6429262 T7 replicate 3 T7
- GSM6431098 M replicate 1 M
- GSM6431099 M replicate 2 M
- GSM6431100 M replicate 3 M
- GSM6431101 M replicate 4 M
- GSM6431102 S replicate 1 S
- GSM6431103 S replicate 2 S
- GSM6431104 S replicate 3 S
- GSM6431105 S replicate 4 S
- GSM6431106 T replicate 1 T
- GSM6431107 T replicate 2 T
- GSM6431108 T replicate 3 T
- GSM6431109 T replicate 4 T
- GSM6431110 TM replicate 1 TM
- GSM6431111 TM replicate 2 TM
- GSM6431112 TM replicate 3 TM
- GSM6431113 TM replicate 4 TM
- GSM8754328 T20 replicate 1 T20
- GSM8754329 T20 replicate 2 T20
- GSM8754330 T20 replicate 3 T20
- GSE302338 Transcriptional landscape of MYCN-driven liver tumors 38 samples shares myc
- GSE307006 Interferon-γ mediated species-specific immune responses in macrophages to Mycobacterium tuberculosis 37 samples shares myc
- GSE270777 MYC couples SWI/SNF and metabolic reprogramming to sustain minimal residual disease in mTORC1-activated cancer cells [RNA-seq] 18 samples shares myc
- GSE181582 IGF2BP1 induces neuroblastoma via a druggable feedforward loop with MYCN promoting 17q oncogene expression 264 samples shares myc
- GSE281781 MYC binding to nascent RNA suppresses innate immune signaling by R-loop-derived RNA-DNA hybrids 186 samples shares myc
- GSE80154 Enhancer invasion shapes MYCN dependent transcriptional amplification in neuroblastoma 144 samples shares myc
- GSE270779 MYC couples SWI/SNF and metabolic reprogramming to sustain minimal residual disease in mTORC1-activated cancer cells 64 samples shares myc
- GSE248326 The catalytic domain of SETD1B regulates H3K4me3 breadth and Myc expression in MLL-r leukemia 53 samples shares myc
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.